% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/AllGenerics.R
\name{counts2fpkmWrapper}
\alias{counts2fpkmWrapper}
\title{Convert counts matrix to FPKM matrix}
\usage{
counts2fpkmWrapper(r, level = "transcript", uniquelyMappableLengths = NULL)
}
\arguments{
\item{r}{A numeric matrix or data.frame with samples as columns and genes/transcripts as rows.}

\item{level}{Character, either "gene" or "tx", used to fetch the right lengths.}

\item{uniquelyMappableLengths}{Whether to use the uniquely mappable lengths for transcripts (default TRUE).}
}
\value{
A matrix/data.frame of the corresponding FPKM values.
}
\description{
Convert fragment counts to FPKM values, using the column sums as library sizes and effective length (see \code{\link{counts2fpkm}}).
}

