##fileformat=VCFv4.2
##reference=file:///Homo_sapiens.GRCh37.GATK.illumina.fasta
##contig=<ID=1,length=249250621>
##contig=<ID=2,length=243199373>
##contig=<ID=3,length=198022430>
##contig=<ID=4,length=191154276>
##contig=<ID=5,length=180915260>
##contig=<ID=6,length=171115067>
##contig=<ID=7,length=159138663>
##contig=<ID=8,length=146364022>
##contig=<ID=9,length=141213431>
##contig=<ID=10,length=135534747>
##contig=<ID=11,length=135006516>
##contig=<ID=12,length=133851895>
##contig=<ID=13,length=115169878>
##contig=<ID=14,length=107349540>
##contig=<ID=15,length=102531392>
##contig=<ID=16,length=90354753>
##contig=<ID=17,length=81195210>
##contig=<ID=18,length=78077248>
##contig=<ID=19,length=59128983>
##contig=<ID=20,length=63025520>
##contig=<ID=21,length=48129895>
##contig=<ID=22,length=51304566>
##contig=<ID=X,length=155270560>
##contig=<ID=Y,length=59373566>
##FORMAT=<ID=GT,Number=1,Type=String,Description="Placeholder field to accomodate VCF parsing tools that require a GT field.">
##ALT=<ID=INS,Description="Insertion">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Length of the SV">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of the SV">
##INFO=<ID=SUPP_SEQ,Number=.,Type=String,Description="Supporting sequencing technologies">
##INFO=<ID=SUPP_VAL,Number=.,Type=String,Description="Supporting validation technologies">
##INFO=<ID=GENE,Number=.,Type=String,Description="Gene(s) overlap in breakpoint">
##INFO=<ID=CLUSTER,Number=.,Type=String,Description="IDs of other clustered breakpoints">
##INFO=<ID=MATEID,Number=.,Type=String,Description="ID of mate breakends">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	COLO829T
1	87337011	truthset_1_1	T	T]10:36119127]	.	PASS	MATEID=truthset_1_2;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_41	GT	0/1
1	118516186	truthset_2_1	T	T[1:118516222[	.	PASS	MATEID=truthset_2_2;SVLEN=36;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=SPAG17;CLUSTER=.	GT	0/1
1	118516222	truthset_2_2	T	]1:118516186]T	.	PASS	MATEID=truthset_2_1;SVLEN=36;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=SPAG17;CLUSTER=.	GT	0/1
1	207981231	truthset_3_1	G	G[1:208014822[	.	PASS	MATEID=truthset_3_2;SVLEN=33591;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,10X;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=.	GT	0/1
1	208014822	truthset_3_2	G	]1:207981231]G	.	PASS	MATEID=truthset_3_1;SVLEN=33591;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,10X;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=.	GT	0/1
1	224646603	truthset_4_1	A	]1:224800120]A	.	PASS	MATEID=truthset_4_2;SVLEN=153517;SVTYPE=DUP;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=truthset_5	GT	0/1
1	224782795	truthset_5_1	C	C[1:224786034[	.	PASS	MATEID=truthset_5_2;SVLEN=3239;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=BIONANO;GENE=.;CLUSTER=truthset_4	GT	0/1
1	224786034	truthset_5_2	C	]1:224782795]C	.	PASS	MATEID=truthset_5_1;SVLEN=3239;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=BIONANO;GENE=.;CLUSTER=truthset_4	GT	0/1
1	224800120	truthset_4_2	A	A[1:224646603[	.	PASS	MATEID=truthset_4_1;SVLEN=153517;SVTYPE=DUP;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=truthset_5	GT	0/1
3	24565108	truthset_6_1	T	[3:24566182[T	.	PASS	MATEID=truthset_6_2;SVLEN=1074;SVTYPE=INV;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_7,truthset_8,_truthset_9,truthset_10,truthset_18,truthset_43	GT	0/1
3	24566182	truthset_6_2	T	[3:24565108[T	.	PASS	MATEID=truthset_6_1;SVLEN=1074;SVTYPE=INV;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_7,truthset_8,_truthset_9,truthset_10,truthset_18,truthset_43	GT	0/1
3	25400602	truthset_7_1	G	G[12:72666892[	.	PASS	MATEID=truthset_7_2;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=CAPTURE;GENE=TRHDE;CLUSTER=truthset_6,truthset_8,truthset_9,truthset_10,truthset_18,truthset_43	GT	0/1
3	25401059	truthset_8_1	G	G[10:60477224[	.	PASS	MATEID=truthset_8_2;SVTYPE=BND;SUPP_SEQ=ILL,ONT;SUPP_VAL=CAPTURE;GENE=BICC1;CLUSTER=truthset_6,truthset_7,truthset_9,truthset_10,truthset_18,truthset_43	GT	0/1
3	26431918	truthset_9_1	T	[6:26194041[T	.	PASS	MATEID=truthset_9_2;SVTYPE=BND;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR;GENE=.;CLUSTER=truthset_6,truthset_7,truthset_8,truthset_10,truthset_18,truthset_43	GT	0/1
3	26663922	truthset_10_1	G	G]3:26664499]	.	PASS	MATEID=truthset_10_2;SVLEN=577;SVTYPE=INV;SUPP_SEQ=ILL,ONT;SUPP_VAL=CAPTURE;GENE=LRRC3B;CLUSTER=truthset_6,truthset_7,truthset_8,truthset_9,truthset_18,truthset_43	GT	0/1
3	26664499	truthset_10_2	G	G]3:26663922]	.	PASS	MATEID=truthset_10_1;SVLEN=577;SVTYPE=INV;SUPP_SEQ=ILL,ONT;SUPP_VAL=CAPTURE;GENE=LRRC3B;CLUSTER=truthset_6,truthset_7,truthset_8,truthset_9,truthset_18,truthset_43	GT	0/1
3	60132754	truthset_11_1	T	T[3:60204543[	.	PASS	MATEID=truthset_11_2;SVLEN=71789;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,BIONANO;GENE=FHIT;CLUSTER=.	GT	0/1
3	60204543	truthset_11_2	T	]3:60132754]T	.	PASS	MATEID=truthset_11_1;SVLEN=71789;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,BIONANO;GENE=FHIT;CLUSTER=.	GT	0/1
3	60872124	truthset_12_1	C	C[3:61013215[	.	PASS	MATEID=truthset_12_2;SVLEN=141091;SVTYPE=DEL;SUPP_SEQ=ILL,PB,10X;SUPP_VAL=PCR,CAPTURE;GENE=FHIT;CLUSTER=.	GT	0/1
3	61013215	truthset_12_2	C	]3:60872124]C	.	PASS	MATEID=truthset_12_1;SVLEN=141091;SVTYPE=DEL;SUPP_SEQ=ILL,PB,10X;SUPP_VAL=PCR,CAPTURE;GENE=FHIT;CLUSTER=.	GT	0/1
3	186442175	truthset_13_1	T	T[3:186513634[	.	PASS	MATEID=truthset_13_2;SVLEN=71459;SVTYPE=DEL;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=KNG1,RFC4;CLUSTER=.	GT	0/1
3	186513634	truthset_13_2	T	]3:186442175]T	.	PASS	MATEID=truthset_13_1;SVLEN=71459;SVTYPE=DEL;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=KNG1,RFC4;CLUSTER=.	GT	0/1
4	66211957	truthset_14_1	T	]4:66212037]T	.	PASS	MATEID=truthset_14_2;SVLEN=80;SVTYPE=DUP;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=EPHA5;CLUSTER=.	GT	0/1
4	66212037	truthset_14_2	T	T[4:66211957[	.	PASS	MATEID=truthset_14_1;SVLEN=80;SVTYPE=DUP;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=EPHA5;CLUSTER=.	GT	0/1
4	187996322	truthset_15_1	T	]4:187996382]T	.	PASS	MATEID=truthset_15_2;SVLEN=60;SVTYPE=DUP;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=CAPTURE;GENE=.;CLUSTER=.	GT	0/1
4	187996382	truthset_15_2	T	T[4:187996322[	.	PASS	MATEID=truthset_15_1;SVLEN=60;SVTYPE=DUP;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=CAPTURE;GENE=.;CLUSTER=.	GT	0/1
5	28787996	truthset_16_1	T	T[5:28963096[	.	PASS	MATEID=truthset_16_2;SVLEN=175100;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	0/1
5	28963096	truthset_16_2	T	]5:28787996]T	.	PASS	MATEID=truthset_16_1;SVLEN=175100;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	0/1
5	178973288	truthset_17_1	C	C[5:178973321[	.	PASS	MATEID=truthset_17_2;SVLEN=33;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=CAPTURE;GENE=.;CLUSTER=.	GT	1/1
5	178973321	truthset_17_2	C	]5:178973288]C	.	PASS	MATEID=truthset_17_1;SVLEN=33;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=CAPTURE;GENE=.;CLUSTER=.	GT	1/1
6	26194041	truthset_9_2	T	[3:26431918[T	.	PASS	MATEID=truthset_9_1;SVTYPE=BND;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR;GENE=.;CLUSTER=truthset_6,truthset_7,truthset_8,truthset_10,truthset_18,truthset_43	GT	0/1
6	26194117	truthset_18_1	G	G]6:26194406]	.	PASS	MATEID=truthset_18_2;SVLEN=289;SVTYPE=INV;SUPP_SEQ=ILL;SUPP_VAL=CAPTURE;GENE=.;CLUSTER=truthset_6,truthset_7,truthset_8,truthset_9,truthset_10,truthset_43	GT	0/1
6	26194406	truthset_18_2	G	G]6:26194117]	.	PASS	MATEID=truthset_18_1;SVLEN=289;SVTYPE=INV;SUPP_SEQ=ILL;SUPP_VAL=CAPTURE;GENE=.;CLUSTER=truthset_6,truthset_7,truthset_8,truthset_9,truthset_10,truthset_43	GT	0/1
6	138774059	truthset_19_1	T	[15:23717166[T	.	PASS	MATEID=truthset_19_2;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=NSHL1;CLUSTER=truthset_20,truthset_52,truthset_53,truthset_54	GT	0/1
6	138774181	truthset_20_1	G	G]15:23712617]	.	PASS	MATEID=truthset_20_2;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=NSHL1;CLUSTER=truthset_19,truthset_52,truthset_53,truthset_54	GT	0/1
7	52440354	truthset_21_1	T	T[7:52440387[	.	PASS	MATEID=truthset_21_2;SVLEN=33;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=.	GT	0/1
7	52440387	truthset_21_2	T	]7:52440354]T	.	PASS	MATEID=truthset_21_1;SVLEN=33;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=.	GT	0/1
7	57471577	truthset_22_1	C	C[7:57496111[	.	PASS	MATEID=truthset_22_2;SVLEN=24534;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	0/1
7	57496111	truthset_22_2	C	]7:57471577]C	.	PASS	MATEID=truthset_22_1;SVLEN=24534;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	0/1
7	77981839	truthset_23_1	C	C[7:78082248[	.	PASS	MATEID=truthset_23_2;SVLEN=100409;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=MAGI2;CLUSTER=.	GT	0/1
7	78082248	truthset_23_2	C	]7:77981839]C	.	PASS	MATEID=truthset_23_1;SVLEN=100409;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=MAGI2;CLUSTER=.	GT	0/1
7	78190206	truthset_24_1	G	G[7:78257685[	.	PASS	MATEID=truthset_24_2;SVLEN=67479;SVTYPE=DEL;SUPP_SEQ=ILL,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=MAGI2;CLUSTER=.	GT	0/1
7	78257685	truthset_24_2	G	]7:78190206]G	.	PASS	MATEID=truthset_24_1;SVLEN=67479;SVTYPE=DEL;SUPP_SEQ=ILL,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=MAGI2;CLUSTER=.	GT	0/1
7	85844668	truthset_25_1	A	]7:85853700]A	.	PASS	MATEID=truthset_25_2;SVLEN=9032;SVTYPE=DUP;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	0/1
7	85853700	truthset_25_2	A	A[7:85844668[	.	PASS	MATEID=truthset_25_1;SVLEN=9032;SVTYPE=DUP;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	0/1
7	104485068	truthset_26_1	T	]7:104612302]T	.	PASS	MATEID=truthset_26_2;SVLEN=127234;SVTYPE=DUP;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=LHFPL3;CLUSTER=.	GT	0/1
7	104612302	truthset_26_2	T	T[7:104485068[	.	PASS	MATEID=truthset_26_1;SVLEN=127234;SVTYPE=DUP;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=LHFPL3;CLUSTER=.	GT	0/1
7	110393332	truthset_27_1	T	T[7:110394461[	.	PASS	MATEID=truthset_27_2;SVLEN=1129;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=IMMP2L;CLUSTER=.	GT	0/1
7	110394461	truthset_27_2	T	]7:110393332]T	.	PASS	MATEID=truthset_27_1;SVLEN=1129;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=IMMP2L;CLUSTER=.	GT	0/1
7	125746125	truthset_28_1	G	G[7:126166901[	.	PASS	MATEID=truthset_28_2;SVLEN=420776;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=GRM8;CLUSTER=.	GT	0/1
7	126098490	truthset_29_1	G	[7:126167441[G	.	PASS	MATEID=truthset_29_2;SVLEN=68951;SVTYPE=INV;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=GRM8;CLUSTER=.	GT	0/1
7	126166901	truthset_28_2	G	]7:125746125]G	.	PASS	MATEID=truthset_28_1;SVLEN=420776;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=GRM8;CLUSTER=.	GT	0/1
7	126167441	truthset_29_2	G	[7:126098490[G	.	PASS	MATEID=truthset_29_1;SVLEN=68951;SVTYPE=INV;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=GRM8;CLUSTER=.	GT	0/1
7	143959226	truthset_30_1	G	G[7:144088794[	.	PASS	MATEID=truthset_30_2;SVLEN=129568;SVTYPE=DEL;SUPP_SEQ=ILL,PB;SUPP_VAL=PCR;GENE=ARHGEF34P;CLUSTER=.	GT	0/1
7	144088794	truthset_30_2	G	]7:143959226]G	.	PASS	MATEID=truthset_30_1;SVLEN=129568;SVTYPE=DEL;SUPP_SEQ=ILL,PB;SUPP_VAL=PCR;GENE=ARHGEF34P;CLUSTER=.	GT	0/1
7	150746657	truthset_31_1	C	C[15:84810725[	.	PASS	MATEID=truthset_31_2;SVTYPE=BND;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE;GENE=ASIC3;CLUSTER=.	GT	0/1
8	112062420	truthset_32_1	T	T[8:112063583[	.	PASS	MATEID=truthset_32_2;SVLEN=1163;SVTYPE=DEL;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=.	GT	0/1
8	112063583	truthset_32_2	T	]8:112062420]T	.	PASS	MATEID=truthset_32_1;SVLEN=1163;SVTYPE=DEL;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=.	GT	0/1
8	131248116	truthset_33_1	T	]8:131274647]T	.	PASS	MATEID=truthset_33_2;SVLEN=26531;SVTYPE=DUP;SUPP_SEQ=ILL;SUPP_VAL=PCR,BIONANO;GENE=ASAP1;CLUSTER=.	GT	0/1
8	131274647	truthset_33_2	T	T[8:131248116[	.	PASS	MATEID=truthset_33_1;SVLEN=26531;SVTYPE=DUP;SUPP_SEQ=ILL;SUPP_VAL=PCR,BIONANO;GENE=ASAP1;CLUSTER=.	GT	0/1
9	28031835	truthset_34_1	A	A]9:28059140]	.	PASS	MATEID=truthset_34_2;SVLEN=27305;SVTYPE=INV;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=LINGO2;CLUSTER=truthset_35,truthset_36	GT	0/1
9	28031863	truthset_35_1	C	[9:28034467[C	.	PASS	MATEID=truthset_35_2;SVLEN=2604;SVTYPE=INV;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=LINGO2;CLUSTER=truthset_34,truthset_36	GT	0/1
9	28034299	truthset_36_1	C	C[9:28157692[	.	PASS	MATEID=truthset_36_2;SVLEN=123393;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=LINGO2;CLUSTER=truthset_34,truthset_35	GT	0/1
9	28034467	truthset_35_2	C	[9:28031863[C	.	PASS	MATEID=truthset_35_1;SVLEN=2604;SVTYPE=INV;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=LINGO2;CLUSTER=truthset_34,truthset_36	GT	0/1
9	28059140	truthset_34_2	A	A]9:28031835]	.	PASS	MATEID=truthset_34_1;SVLEN=27305;SVTYPE=INV;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=LINGO2;CLUSTER=truthset_35,truthset_36	GT	0/1
9	28157692	truthset_36_2	C	]9:28034299]C	.	PASS	MATEID=truthset_36_1;SVLEN=123393;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=LINGO2;CLUSTER=truthset_34,truthset_35	GT	0/1
9	114293052	truthset_37_1	T	T[9:114293097[	.	PASS	MATEID=truthset_37_2;SVLEN=45;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=NOT_VALIDATED;GENE=ZNF483;CLUSTER=.	GT	0/1
9	114293097	truthset_37_2	T	]9:114293052]T	.	PASS	MATEID=truthset_37_1;SVLEN=45;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=NOT_VALIDATED;GENE=ZNF483;CLUSTER=.	GT	0/1
10	7059512	truthset_38_1	T	]19:17396810]T	.	PASS	MATEID=truthset_38_2;SVTYPE=BND;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=ANKLE1;CLUSTER=truthset_39,truthset_40	GT	0/1
10	7132874	truthset_39_1	A	A[19:17397644[	.	PASS	MATEID=truthset_39_2;SVTYPE=BND;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE;GENE=ANKLE1;CLUSTER=truthset_38,truthset_40	GT	0/1
10	7634373	truthset_40_1	A	[18:9868617[A	.	PASS	MATEID=truthset_40_2;SVTYPE=BND;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE;GENE=ITIH5;CLUSTER=truthset_38,truthset_39	GT	0/1
10	33386453	truthset_41_1	T	T[10:36119061[	.	PASS	MATEID=truthset_41_2;SVLEN=2732608;SVTYPE=DEL;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_1	GT	0/1
10	36119061	truthset_41_2	T	]10:33386453]T	.	PASS	MATEID=truthset_41_1;SVLEN=2732608;SVTYPE=DEL;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_1	GT	0/1
10	36119127	truthset_1_2	T	T]1:87337011]	.	PASS	MATEID=truthset_1_1;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_41	GT	0/1
10	55476347	truthset_42_1	C	C[10:55476896[	.	PASS	MATEID=truthset_42_2;SVLEN=549;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=CAPTURE;GENE=.;CLUSTER=.	GT	0/1
10	55476896	truthset_42_2	C	]10:55476347]C	.	PASS	MATEID=truthset_42_1;SVLEN=549;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=CAPTURE;GENE=.;CLUSTER=.	GT	0/1
10	60477224	truthset_8_2	G	]3:25401059]G	.	PASS	MATEID=truthset_8_1;SVTYPE=BND;SUPP_SEQ=ILL,ONT;SUPP_VAL=CAPTURE;GENE=BICC1;CLUSTER=truthset_6,truthset_7,truthset_9,truthset_10,truthset_18,truthset_43	GT	0/1
10	60477422	truthset_43_1	G	G]12:72667075]	.	PASS	MATEID=truthset_43_2;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=CAPTURE;GENE=BICC1,TRHDE;CLUSTER=truthset_6,truthset_7,truthset_8,truthset_9,truthset_10,truthset_18	GT	0/1
10	83641806	truthset_44_1	T	T[10:83827666[	.	PASS	MATEID=truthset_44_2;SVLEN=185860;SVTYPE=DEL;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=NRG3;CLUSTER=.	GT	0/1
10	83827666	truthset_44_2	T	]10:83641806]T	.	PASS	MATEID=truthset_44_1;SVLEN=185860;SVTYPE=DEL;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=NRG3;CLUSTER=.	GT	0/1
10	89700299	truthset_45_1	A	A[10:89712341[	.	PASS	MATEID=truthset_45_2;SVLEN=12042;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=PTEN;CLUSTER=.	GT	1/1
10	89712341	truthset_45_2	A	]10:89700299]A	.	PASS	MATEID=truthset_45_1;SVLEN=12042;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=PTEN;CLUSTER=.	GT	1/1
11	80785600	truthset_46_1	T	T[11:81093780[	.	PASS	MATEID=truthset_46_2;SVLEN=308180;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	0/1
11	81093780	truthset_46_2	T	]11:80785600]T	.	PASS	MATEID=truthset_46_1;SVLEN=308180;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	0/1
12	72666892	truthset_7_2	G	]3:25400602]G	.	PASS	MATEID=truthset_7_1;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=CAPTURE;GENE=TRHDE;CLUSTER=truthset_6,truthset_8,truthset_9,truthset_10,truthset_18,truthset_43	GT	0/1
12	72667075	truthset_43_2	G	G]10:60477422]	.	PASS	MATEID=truthset_43_1;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=CAPTURE;GENE=BICC1,TRHDE;CLUSTER=truthset_6,truthset_7,truthset_8,truthset_9,truthset_10,truthset_18	GT	0/1
12	92161147	truthset_47_1	C	C[12:92161182[	.	PASS	MATEID=truthset_47_2;SVLEN=35;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=.	GT	0/1
12	92161182	truthset_47_2	C	]12:92161147]C	.	PASS	MATEID=truthset_47_1;SVLEN=35;SVTYPE=DEL;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=.	GT	0/1
12	129771777	truthset_48_1	N	<INS>	.	PASS	SVLEN=255;SVTYPE=INS;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR;GENE=TMEM132D;CLUSTER=.	GT	0/1
14	73014649	truthset_49_1	T	T[14:73014746[	.	PASS	MATEID=truthset_49_2;SVLEN=96;SVTYPE=INS;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=RGS6;CLUSTER=.	GT	0/1
14	73014746	truthset_49_2	T	]14:73014649]T	.	PASS	MATEID=truthset_49_1;SVLEN=96;SVTYPE=INS;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=RGS6;CLUSTER=.	GT	0/1
14	104560088	truthset_50_1	G	G[14:104560143[	.	PASS	MATEID=truthset_50_2;SVLEN=55;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=NOT_VALIDATED;GENE=ASPG;CLUSTER=.	GT	1/1
14	104560143	truthset_50_2	G	]14:104560088]G	.	PASS	MATEID=truthset_50_1;SVLEN=55;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=NOT_VALIDATED;GENE=ASPG;CLUSTER=.	GT	1/1
14	106333876	truthset_51_1	A	<INS>	.	PASS	SVLEN=100;SVTYPE=INS;SUPP_SEQ=ONT,PB;SUPP_VAL=PCR;GENE=.;CLUSTER=.	GT	0/1
15	23685608	truthset_52_1	C	[20:37274468[C	.	PASS	MATEID=truthset_52_2;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_19,truthset_20,truthset_53,truthset_54	GT	0/1
15	23706879	truthset_53_1	C	]20:37274667]C	.	PASS	MATEID=truthset_53_2;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_19,truthset_20,truthset_52,truthset_54	GT	0/1
15	23712617	truthset_20_2	G	G]6:138774181]	.	PASS	MATEID=truthset_20_1;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=NSHL1;CLUSTER=truthset_19,truthset_52,truthset_53,truthset_54	GT	0/1
15	23717166	truthset_19_2	T	[6:138774059[T	.	PASS	MATEID=truthset_19_1;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=NSHL1;CLUSTER=truthset_20,truthset_52,truthset_53,truthset_54	GT	0/1
15	23831660	truthset_54_1	A	A]15:23992700]	.	PASS	MATEID=truthset_54_2;SVLEN=161040;SVTYPE=INV;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_19,truthset_20,truthset_52,truthset_53	GT	0/1
15	23992700	truthset_54_2	A	A]15:23831660]	.	PASS	MATEID=truthset_54_1;SVLEN=161040;SVTYPE=INV;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_19,truthset_20,truthset_52,truthset_53	GT	0/1
15	41621294	truthset_55_1	A	]15:41628506]A	.	PASS	MATEID=truthset_55_2;SVLEN=7212;SVTYPE=DUP;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=OIP5,NUSAP1;CLUSTER=.	GT	0/1
15	41628506	truthset_55_2	A	A[15:41621294[	.	PASS	MATEID=truthset_55_1;SVLEN=7212;SVTYPE=DUP;SUPP_SEQ=ILL,ONT;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=OIP5,NUSAP1;CLUSTER=.	GT	0/1
15	84810725	truthset_31_2	C	]7:150746657]C	.	PASS	MATEID=truthset_31_1;SVTYPE=BND;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE;GENE=ASIC3;CLUSTER=.	GT	0/1
16	58624545	truthset_56_1	T	T[16:58663331[	.	PASS	MATEID=truthset_56_2;SVLEN=38786;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=CNOT1;CLUSTER=.	GT	1/1
16	58663331	truthset_56_2	T	]16:58624545]T	.	PASS	MATEID=truthset_56_1;SVLEN=38786;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=CNOT1;CLUSTER=.	GT	1/1
16	78928636	truthset_57_1	G	G[16:79095007[	.	PASS	MATEID=truthset_57_2;SVLEN=166371;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=WWOX;CLUSTER=.	GT	0/1
16	79095007	truthset_57_2	G	]16:78928636]G	.	PASS	MATEID=truthset_57_1;SVLEN=166371;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=WWOX;CLUSTER=.	GT	0/1
18	9868617	truthset_40_2	A	[10:7634373[A	.	PASS	MATEID=truthset_40_1;SVTYPE=BND;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE;GENE=ITIH5;CLUSTER=truthset_38,truthset_39	GT	0/1
18	66379461	truthset_58_1	C	C[18:66382826[	.	PASS	MATEID=truthset_58_2;SVLEN=3365;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=TMX3,CCDC102B;CLUSTER=.	GT	0/1
18	66382826	truthset_58_2	C	]18:66379461]C	.	PASS	MATEID=truthset_58_1;SVLEN=3365;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=TMX3,CCDC102B;CLUSTER=.	GT	0/1
19	17396810	truthset_38_2	T	T[10:7059512[	.	PASS	MATEID=truthset_38_1;SVTYPE=BND;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=ANKLE1;CLUSTER=truthset_39,truthset_40	GT	0/1
19	17397644	truthset_39_2	A	]10:7132874]A	.	PASS	MATEID=truthset_39_1;SVTYPE=BND;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE;GENE=ANKLE1;CLUSTER=truthset_38,truthset_40	GT	0/1
20	13160729	truthset_59_1	C	C[20:13164103[	.	PASS	MATEID=truthset_59_2;SVLEN=3374;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	0/1
20	13164103	truthset_59_2	C	]20:13160729]C	.	PASS	MATEID=truthset_59_1;SVLEN=3374;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	0/1
20	14962957	truthset_60_1	G	G[20:15013948[	.	PASS	MATEID=truthset_60_2;SVLEN=50991;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=MACROD2;CLUSTER=truthset_61	GT	0/1
20	15000623	truthset_61_1	A	A[20:15013842[	.	PASS	MATEID=truthset_61_2;SVLEN=13219;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=MACROD2;CLUSTER=truthset_60	GT	0/1
20	15013842	truthset_61_2	A	]20:15000623]A	.	PASS	MATEID=truthset_61_1;SVLEN=13219;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB;SUPP_VAL=PCR,CAPTURE;GENE=MACROD2;CLUSTER=truthset_60	GT	0/1
20	15013948	truthset_60_2	G	]20:14962957]G	.	PASS	MATEID=truthset_60_1;SVLEN=50991;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=MACROD2;CLUSTER=truthset_61	GT	0/1
20	33219526	truthset_62_1	C	C[20:33219569[	.	PASS	MATEID=truthset_62_2;SVLEN=49;SVTYPE=DEL;SUPP_SEQ=ONT,PB;SUPP_VAL=PCR;GENE=PIGU;CLUSTER=.	GT	0/1
20	33219569	truthset_62_2	C	]20:33219526]C	.	PASS	MATEID=truthset_62_1;SVLEN=49;SVTYPE=DEL;SUPP_SEQ=ONT,PB;SUPP_VAL=PCR;GENE=PIGU;CLUSTER=.	GT	0/1
20	37274468	truthset_52_2	C	[15:23685608[C	.	PASS	MATEID=truthset_52_1;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_19,truthset_20,truthset_53,truthset_54	GT	0/1
20	37274667	truthset_53_2	C	C[15:23706879[	.	PASS	MATEID=truthset_53_1;SVTYPE=BND;SUPP_SEQ=ILL;SUPP_VAL=PCR,CAPTURE;GENE=.;CLUSTER=truthset_19,truthset_20,truthset_52,truthset_54	GT	0/1
22	33759249	truthset_63_1	A	A[22:33838399[	.	PASS	MATEID=truthset_63_2;SVLEN=79150;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=LARGE;CLUSTER=.	GT	0/1
22	33838399	truthset_63_2	A	]22:33759249]A	.	PASS	MATEID=truthset_63_1;SVLEN=79150;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=LARGE;CLUSTER=.	GT	0/1
X	31196943	truthset_64_1	A	A[X:31216211[	.	PASS	MATEID=truthset_64_2;SVLEN=19268;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=DMD;CLUSTER=.	GT	0/1
X	31216211	truthset_64_2	A	]X:31196943]A	.	PASS	MATEID=truthset_64_1;SVLEN=19268;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=DMD;CLUSTER=.	GT	0/1
X	31301203	truthset_65_1	T	T[X:32038750[	.	PASS	MATEID=truthset_65_2;SVLEN=737547;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE;GENE=DMD;CLUSTER=.	GT	0/1
X	32038750	truthset_65_2	T	]X:31301203]T	.	PASS	MATEID=truthset_65_1;SVLEN=737547;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE;GENE=DMD;CLUSTER=.	GT	0/1
X	32077855	truthset_66_1	G	G[X:32293097[	.	PASS	MATEID=truthset_66_2;SVLEN=215242;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=DMD;CLUSTER=.	GT	0/1
X	32098532	truthset_67_1	A	A[X:32201251[	.	PASS	MATEID=truthset_67_2;SVLEN=102719;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=DMD;CLUSTER=.	GT	0/1
X	32201251	truthset_67_2	A	]X:32098532]A	.	PASS	MATEID=truthset_67_1;SVLEN=102719;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=DMD;CLUSTER=.	GT	0/1
X	32293097	truthset_66_2	G	]X:32077855]G	.	PASS	MATEID=truthset_66_1;SVLEN=215242;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=DMD;CLUSTER=.	GT	0/1
X	34059778	truthset_68_1	C	C[X:34062705[	.	PASS	MATEID=truthset_68_2;SVLEN=2927;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	1/1
X	34062705	truthset_68_2	C	]X:34059778]C	.	PASS	MATEID=truthset_68_1;SVLEN=2927;SVTYPE=DEL;SUPP_SEQ=ILL,ONT,PB,10X;SUPP_VAL=PCR,CAPTURE,BIONANO;GENE=.;CLUSTER=.	GT	1/1
