##fileformat=VCFv4.1
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=PARID,Number=1,Type=String,Description="ID of partner breakend">
##INFO=<ID=EVENT,Number=1,Type=String,Description="ID of event associated to breakend">
##ALT=<ID=DUP,Description="">
##ALT=<ID=DEL,Description="">
##ALT=<ID=INV,Description="">
##INFO=<ID=left_chr,Number=1,Type=String,Description="">
##INFO=<ID=left_pos,Number=1,Type=Integer,Description="">
##INFO=<ID=left_strand,Number=1,Type=String,Description="">
##INFO=<ID=left_softclipped_read_count,Number=1,Type=Integer,Description="">
##INFO=<ID=right_chr,Number=1,Type=String,Description="">
##INFO=<ID=right_pos,Number=1,Type=Integer,Description="">
##INFO=<ID=right_strand,Number=1,Type=String,Description="">
##INFO=<ID=right_softclipped_read_count,Number=1,Type=Integer,Description="">
##INFO=<ID=type,Number=1,Type=String,Description="">
##INFO=<ID=left_coverage,Number=1,Type=Integer,Description="">
##INFO=<ID=right_coverage,Number=1,Type=Integer,Description="">
##INFO=<ID=left_assembly_length,Number=1,Type=Integer,Description="assembled length at left_pos">
##INFO=<ID=right_assembly_length,Number=1,Type=Integer,Description="assembled length at right_pos">
##INFO=<ID=left_percent_identity,Number=1,Type=Float,Description="average percent identity at left_pos">
##INFO=<ID=left_percent_multimapping,Number=1,Type=Float,Description="percent of non-unique mapping reads at left_pos">
##INFO=<ID=right_percent_identity,Number=1,Type=Float,Description="average percent identity at right_pos">
##INFO=<ID=right_percent_multimapping,Number=1,Type=Float,Description="percent of non-unique mapping reads at right_pos">
##INFO=<ID=consensus_start_pos,Number=1,Type=Integer,Description="start position of consensus mapping to genome">
##INFO=<ID=consensus_start_chr,Number=1,Type=String,Description="starting chromosome of consensus mapping">
##INFO=<ID=consensus_mapping_start_pos,Number=1,Type=Integer,Description="position of the genomic mapping of consensus starting position">
##INFO=<ID=consensus_mapping_end_pos,Number=1,Type=Integer,Description="end position of consensus mapping to genome">
##INFO=<ID=consensus_end_chr,Number=1,Type=String,Description="ending chromsome of consnesus mapping">
##INFO=<ID=consensus_mapping_end_pos2,Number=1,Type=Integer,Description="position of genomic mapping of consensus ending posiiton">
##INFO=<ID=consensus,Number=1,Type=String,Description="consensus sequences">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
chr22	17770350	line2120	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=8759;left_chr=chr22;left_pos=17770350;left_strand=+;left_softclipped_read_count=7;right_chr=chr22;right_pos=17779109;right_strand=+;right_softclipped_read_count=10;left_coverage=37;right_coverage=36;left_assembly_length=63;right_assembly_length=78;left_percent_identity=0.906722251172;left_percent_multimapping=0.210526315789;right_percent_identity=0.82700770077;right_percent_multimapping=0.305555555556;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=17770253;consensus_mapping_end_pos=17779189;consensus_end_chr=chr22;consensus_mapping_end_pos2=17779189;consensus=GCTAAGCTTGCTAAACCTTGAAAGGACTGCCTTCTTGTTGAAGCAGAGTGAGTTTAGGGGACAATAAAAAAAGGCCACCAAAGAAAAGAGGAGGGCACCCCATTCTCCCCGTCACTTTCAGGTACACCAATCAAACATAGATTTGGTCTTTTCACGTAGTCCCATATTTCTTGGAGGCTT
chr22	18047375	line2121	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=344;left_chr=chr22;left_pos=18047375;left_strand=+;left_softclipped_read_count=9;right_chr=chr22;right_pos=18047719;right_strand=+;right_softclipped_read_count=21;left_coverage=16;right_coverage=30;left_assembly_length=70;right_assembly_length=69;left_percent_identity=0.762376237624;left_percent_multimapping=0.647058823529;right_percent_identity=0.715841584158;right_percent_multimapping=0.866666666667;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=18047280;consensus_mapping_end_pos=18047809;consensus_end_chr=chr22;consensus_mapping_end_pos2=18047809;consensus=GTTTCATCTAGACCCAACGTGGTTTAACAGCCTTTTGCCCCAAATTAGACAATTTGCCAGTGGATCTCCATTTTACCTCTCTATCCTTGCTTTTATAATTCCATCAACATCTTTGCCTTTCCTCCAACCCAAAATCAATTGCCACTTTCTTCCTGAAACCTTTCCATGTCTC
chr22	18099532	line2122	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=295;left_chr=chr22;left_pos=18099532;left_strand=+;left_softclipped_read_count=9;right_chr=chr22;right_pos=18099827;right_strand=+;right_softclipped_read_count=10;left_coverage=32;right_coverage=28;left_assembly_length=71;right_assembly_length=59;left_percent_identity=0.78280808473;left_percent_multimapping=0.377777777778;right_percent_identity=0.715673749538;right_percent_multimapping=0.612903225806;consensus_start_pos=2;consensus_start_chr=chr22;consensus_mapping_start_pos=18099446;consensus_mapping_end_pos=18099920;consensus_end_chr=chr22;consensus_mapping_end_pos2=18099920;consensus=AAAAAAAAAAAAAAAAAAAGAAATGCATTTCCTGAAATAATAGCTGAAATAGGACTTCTGTATTTGATCCAGAAAGAGTCATACAAGAAACTATCACCATCAAAACAATATTAAGCAATATCCTATCAGCTGTTATGTATTAGTGAGAGGGAAAATAGTCTTTTCT
chr22	18977576	line2123	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=65;left_chr=chr22;left_pos=18977576;left_strand=+;left_softclipped_read_count=4;right_chr=chr22;right_pos=18977641;right_strand=+;right_softclipped_read_count=5;left_coverage=32;right_coverage=34;left_assembly_length=32;right_assembly_length=27;left_percent_identity=0.918935643564;left_percent_multimapping=0.3125;right_percent_identity=0.917339212913;right_percent_multimapping=0.257142857143;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=18977481;consensus_mapping_end_pos=18977729;consensus_end_chr=chr22;consensus_mapping_end_pos2=18977729;consensus=AGAACTCGCTCATTACCAAGGGGAGGACACCAAGCCATTCATGGGGGACCCACCCCCATGACCCAAACAACCCCGACCACGCCCACCTCCAACCCTTAAGCAGTCCATCTCCAGAACTCTTTTCATCCTGCAGATCTGAAACTCTAGCCCACAAAACACCAACTCCACTCCCCAGCCACTGGTG
chr22	19099932	line2124	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=694;left_chr=chr22;left_pos=19099932;left_strand=+;left_softclipped_read_count=5;right_chr=chr22;right_pos=19100626;right_strand=+;right_softclipped_read_count=15;left_coverage=31;right_coverage=38;left_assembly_length=78;right_assembly_length=56;left_percent_identity=0.828382838284;left_percent_multimapping=0.435897435897;right_percent_identity=0.90099009901;right_percent_multimapping=0.161290322581;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=19099851;consensus_mapping_end_pos=19100720;consensus_end_chr=chr22;consensus_mapping_end_pos2=19100720;consensus=CAATTAGTGTAATGAAAGAGGGGCTTGTTATAAATACTGAGGTTACAGTAAATACCACTCTCAATATTATTTAATAAACATGTAATACCAGCACTTTGGGAGGTGGAGGTAGGCAGATCATGAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTTTACT
chr22	20950623	line2125	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=3217;left_chr=chr22;left_pos=20950623;left_strand=+;left_softclipped_read_count=7;right_chr=chr22;right_pos=20953840;right_strand=+;right_softclipped_read_count=11;left_coverage=31;right_coverage=25;left_assembly_length=71;right_assembly_length=69;left_percent_identity=0.771134805788;left_percent_multimapping=0.461538461538;right_percent_identity=0.909653465347;right_percent_multimapping=0.25;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=20950533;consensus_mapping_end_pos=20953926;consensus_end_chr=chr22;consensus_mapping_end_pos2=20953926;consensus=TAGGGAAGCTACCCCAGAAGTATAGGCATGGCTGCTTGCACCACCAATTTAAATGCTAATTACTTCTGAAAACACCCTCACACACATGCCCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGCTCAGGCTGGTCTCAAACTCCTGAGCTCAGGCGATCCACCTGC
chr22	24054889	line2126	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=65;left_chr=chr22;left_pos=24054889;left_strand=+;left_softclipped_read_count=14;right_chr=chr22;right_pos=24054954;right_strand=+;right_softclipped_read_count=17;left_coverage=30;right_coverage=30;left_assembly_length=43;right_assembly_length=44;left_percent_identity=0.802299584797;left_percent_multimapping=0.806451612903;right_percent_identity=0.764611945065;right_percent_multimapping=0.935483870968;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=24054792;consensus_mapping_end_pos=24055050;consensus_end_chr=chr22;consensus_mapping_end_pos2=24055050;consensus=GGAAGACTCCCAGAAAGGGAGTTTCCCCAGTAATAATCAGCGCTCTCTCATCCTTAGGAGCAGACTGCCCTGAATCCTCTCTCAGGGTGAACCGAGTACCTGGGATTATATAATGGAGTGTTGCAATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAGTTCTCCCATCTCAACCTCCCTA
chr22	24195949	line2127	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=2557;left_chr=chr22;left_pos=24195949;left_strand=+;left_softclipped_read_count=8;right_chr=chr22;right_pos=24198506;right_strand=+;right_softclipped_read_count=12;left_coverage=20;right_coverage=43;left_assembly_length=71;right_assembly_length=75;left_percent_identity=0.746204620462;left_percent_multimapping=0.6;right_percent_identity=0.862976562846;right_percent_multimapping=0.326086956522;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=24195851;consensus_mapping_end_pos=24198599;consensus_end_chr=chr22;consensus_mapping_end_pos2=24198599;consensus=AAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCACTTCCCACTTATTTCTTAAGGGGGAAAAGGCAATGGTTGTTTTGAAAAAAATTAACCTATCAAAATAAAATACCAGCAGTTGAAACTAACAATGTATTAATAACAATAATATTATGACCAAGTTGCGTCTACCCCAA
chr22	24274144	line2128	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=37154;left_chr=chr22;left_pos=24274144;left_strand=+;left_softclipped_read_count=29;right_chr=chr22;right_pos=24311298;right_strand=+;right_softclipped_read_count=25;left_coverage=29;right_coverage=42;left_assembly_length=79;right_assembly_length=79;left_percent_identity=0.526852685269;left_percent_multimapping=0.939393939394;right_percent_identity=0.756215621562;right_percent_multimapping=0.933333333333;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=24274048;consensus_mapping_end_pos=24311394;consensus_end_chr=chr22;consensus_mapping_end_pos2=24311394;consensus=TTCTTTGTAATCAAACGGTTTGGGGAGGGGGGAGAAAGGGCTTACTGAATGTCTAAAAAAACAAGTTTAAACTGTTTGTTACCCAAAGTTTGGTGCACTCTCCCTTTGCTCAGACAAGACATGCTATCCCCATGAGGTAGATAATCTCCATTATGCCAATTTTATGATGAGAAGACTAAGGCTCTTCATACT
chr22	25628562	line2129	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=43;left_chr=chr22;left_pos=25628562;left_strand=+;left_softclipped_read_count=6;right_chr=chr22;right_pos=25628605;right_strand=+;right_softclipped_read_count=0;left_coverage=34;right_coverage=31;left_assembly_length=39;right_assembly_length=0;left_percent_identity=0.895653330515;left_percent_multimapping=0.447368421053;right_percent_identity=0.903503158382;right_percent_multimapping=0.333333333333;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=25628473;consensus_mapping_end_pos=25628643;consensus_end_chr=chr22;consensus_mapping_end_pos2=25628643;consensus=CTGGGAATGAAGGCTGGGTTTACACTGCTGTTCTGGGGCACTGGCCAGGGATAGAGGCTCAGGCAAGTCCTTTTGCCTTCAGAGCTTTGAACGCGGTTGTGATGGGGCTGAAACAAGATGCTGCAGGCC
chr22	26891519	line2130	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=125;left_chr=chr22;left_pos=26891519;left_strand=+;left_softclipped_read_count=3;right_chr=chr22;right_pos=26891644;right_strand=+;right_softclipped_read_count=11;left_coverage=33;right_coverage=35;left_assembly_length=45;right_assembly_length=43;left_percent_identity=0.869086908691;left_percent_multimapping=0.583333333333;right_percent_identity=0.914843476858;right_percent_multimapping=0.314285714286;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=26891441;consensus_mapping_end_pos=26891665;consensus_end_chr=chr22;consensus_mapping_end_pos2=26891665;consensus=CATGTTGCTCAGGCTGTAATCTGCTTTTAAAGGTCAAATTTAAGCTCCCGACATAGCGATTCTTAAAATATATATGTGTGTGTGTGTGTGTATGTATATATATTTTTTTTGCTAACCTGGAAATAACTCCCTAATAATTTAGAGTAAAATACCACAAAAA
chr22	27168076	line2131	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=1717;left_chr=chr22;left_pos=27168076;left_strand=+;left_softclipped_read_count=16;right_chr=chr22;right_pos=27169793;right_strand=+;right_softclipped_read_count=11;left_coverage=46;right_coverage=33;left_assembly_length=79;right_assembly_length=76;left_percent_identity=0.832113646147;left_percent_multimapping=0.5;right_percent_identity=0.851768033946;right_percent_multimapping=0.342857142857;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=27167986;consensus_mapping_end_pos=27169881;consensus_end_chr=chr22;consensus_mapping_end_pos2=27169881;consensus=CCTTGCACATACAGAAAAAAAGTAAGAGTTGCTATTATTGTTGCTTTTATCAGTGGGTACCCATTACCAGCCCAGCCCACCCTTAACCTCTAAATGAAATTAGAAGCCATGTGTTCTGACTGTCTGTATTCATCAGGATGCATAAGGAAAACAGAAACCCCTCTAGGTAT
chr22	30737515	line2132	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=79;left_chr=chr22;left_pos=30737515;left_strand=+;left_softclipped_read_count=4;right_chr=chr22;right_pos=30737594;right_strand=+;right_softclipped_read_count=3;left_coverage=33;right_coverage=26;left_assembly_length=43;right_assembly_length=45;left_percent_identity=0.919268849962;left_percent_multimapping=0.307692307692;right_percent_identity=0.902490249025;right_percent_multimapping=0.363636363636;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=30737424;consensus_mapping_end_pos=30737662;consensus_end_chr=chr22;consensus_mapping_end_pos2=30737662;consensus=CAGGCTGTCCGGGCCAGGGAGGCGGCCACAGAACAGGTCAGCACAGCTTTTAGATCCTTGCCTATGAATGAATCTTTGTTGCCGGAGCTGGATCTGACTGGTGGAGAGCACTTCGACCTCCTGGGGCTTCAGGGGAAAAGGTCATCCTGCAG
chr22	31776422	line2133	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=4201;left_chr=chr22;left_pos=31776422;left_strand=+;left_softclipped_read_count=12;right_chr=chr22;right_pos=31780623;right_strand=+;right_softclipped_read_count=7;left_coverage=38;right_coverage=30;left_assembly_length=69;right_assembly_length=53;left_percent_identity=0.884835852006;left_percent_multimapping=0.315789473684;right_percent_identity=0.921122112211;right_percent_multimapping=0.233333333333;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=31776331;consensus_mapping_end_pos=31780713;consensus_end_chr=chr22;consensus_mapping_end_pos2=31780713;consensus=ATGCACCACCACACCCAGCTAAGTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGCCCAGGCTTGTAATTCTTTTAATTTGCTGTTGTTGGTATATAGGCATGCTAGTGATTTTTGTACATTGATTTTGTATCCTGAAACTGCTGAAGTTTATCAGCTGAAGAATCTT
chr22	33295772	line2135	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=305;left_chr=chr22;left_pos=33295772;left_strand=+;left_softclipped_read_count=7;right_chr=chr22;right_pos=33296077;right_strand=+;right_softclipped_read_count=3;left_coverage=31;right_coverage=30;left_assembly_length=81;right_assembly_length=50;left_percent_identity=0.903545193229;left_percent_multimapping=0.322580645161;right_percent_identity=0.747268345037;right_percent_multimapping=0.40625;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=33295681;consensus_mapping_end_pos=33296171;consensus_end_chr=chr22;consensus_mapping_end_pos2=33296171;consensus=TCCTGGCCCTGAAACTCACTAGCCAGAAACCCTGAACAAGTCAATTTCCCTCTTTTGAGCCTTCGTTCTTTTACAGTTAAAACAAGGAAGTCAGATGGTATACTTCTGAGGCCTTTATTAGCTAAAATATTCTGAGAGAGTGTGACCTTCTAGTACTGTCTCCCATGGAACTG
chr22	33751617	line2136	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=150;left_chr=chr22;left_pos=33751617;left_strand=+;left_softclipped_read_count=3;right_chr=chr22;right_pos=33751767;right_strand=+;right_softclipped_read_count=6;left_coverage=27;right_coverage=43;left_assembly_length=32;right_assembly_length=43;left_percent_identity=0.914344922864;left_percent_multimapping=0.255813953488;right_percent_identity=0.921852899576;right_percent_multimapping=0.285714285714;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=33751525;consensus_mapping_end_pos=33751851;consensus_end_chr=chr22;consensus_mapping_end_pos2=33751851;consensus=CCTTTGTCTCTTGCTCACCTTGGTTACTCTTCTCTGATCACGGCCAAGTTATGAACCCATGATCCATTCAATTTATGGTCTTTTCCAGAATCTTTACAATGGTGCTTCCTTTGCTCAAAATTGTGTTCTTCTTAATAGAGCCAGTATTTATGTAAGGAAGTGTGGGCTTCTAAGGA
chr22	35645166	line2137	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=974;left_chr=chr22;left_pos=35645166;left_strand=+;left_softclipped_read_count=8;right_chr=chr22;right_pos=35646140;right_strand=+;right_softclipped_read_count=6;left_coverage=42;right_coverage=36;left_assembly_length=81;right_assembly_length=79;left_percent_identity=0.913484205563;left_percent_multimapping=0.190476190476;right_percent_identity=0.938668866887;right_percent_multimapping=0.166666666667;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=35645073;consensus_mapping_end_pos=35646236;consensus_end_chr=chr22;consensus_mapping_end_pos2=35646236;consensus=GCAGAGTCTTGTTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAACCTCTGCCTCCCGGATTCAAGTGATTCTCCTGCCACAGACAAGGACCAGCTCAAAGGCCCCCTCTTCCCTGAAGCTGCATGTACTAGTTCATTTGCATTGTATAAAGGAATACTTGAGACTGGGTAATT
chr22	37127089	line2138	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=157;left_chr=chr22;left_pos=37127089;left_strand=+;left_softclipped_read_count=12;right_chr=chr22;right_pos=37127246;right_strand=+;right_softclipped_read_count=24;left_coverage=22;right_coverage=27;left_assembly_length=34;right_assembly_length=37;left_percent_identity=0.746448557899;left_percent_multimapping=0.913043478261;right_percent_identity=0.808580858086;right_percent_multimapping=0.925925925926;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=37126992;consensus_mapping_end_pos=37127329;consensus_end_chr=chr22;consensus_mapping_end_pos2=37127329;consensus=GGGAACATCCTCACGCATGCTGGCTACACATCAATAACTCCCAGATTTCTGTTTTTTTGTTTGTTTGTGGTTTTTTTTTGTTTGTTTTTTGTTTTTTTGAGACAGAGTTTCATTCTTGTCTCCCAAACTGGAGTGCAATGGCGCAATCTCAGGTCACTGCCACCTCCGCCTCCCGGGTTC
chr22	44523622	line2139	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=48;left_chr=chr22;left_pos=44523622;left_strand=+;left_softclipped_read_count=0;right_chr=chr22;right_pos=44523670;right_strand=+;right_softclipped_read_count=5;left_coverage=32;right_coverage=33;left_assembly_length=0;right_assembly_length=30;left_percent_identity=0.845299124251;left_percent_multimapping=0.612903225806;right_percent_identity=0.918859056017;right_percent_multimapping=0.272727272727;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=44523593;consensus_mapping_end_pos=44523766;consensus_end_chr=chr22;consensus_mapping_end_pos2=44523766;consensus=GAACAGACTTCTGGTTTGGCCATGTGGAAATTTTTTTTTCTCTTGAGATAGTGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCACAGCTCACTGCAGCCTTGACCCCTAGGCTTGGA
chr22	45875034	line2140	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=317;left_chr=chr22;left_pos=45875034;left_strand=+;left_softclipped_read_count=22;right_chr=chr22;right_pos=45875351;right_strand=+;right_softclipped_read_count=15;left_coverage=31;right_coverage=17;left_assembly_length=77;right_assembly_length=59;left_percent_identity=0.557022051686;left_percent_multimapping=0.852941176471;right_percent_identity=0.657542224811;right_percent_multimapping=0.882352941176;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=45874940;consensus_mapping_end_pos=45875441;consensus_end_chr=chr22;consensus_mapping_end_pos2=45875441;consensus=GGTTGTGGTGAGCTGAGATGGCGCCATTGTACTCCAGCCTGGGTGACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAGTTTATTATAAATTTTTAAATATCAAAAACATAGACTGTCTCTAAAGTAAAATCAAGACAAAACAAAAAATAAAAAATAATTAAAAATAAAAAA
chr22	46363339	line2141	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=47;left_chr=chr22;left_pos=46363339;left_strand=+;left_softclipped_read_count=6;right_chr=chr22;right_pos=46363386;right_strand=+;right_softclipped_read_count=5;left_coverage=40;right_coverage=43;left_assembly_length=39;right_assembly_length=41;left_percent_identity=0.920084865629;left_percent_multimapping=0.238095238095;right_percent_identity=0.90099009901;right_percent_multimapping=0.282608695652;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=46363250;consensus_mapping_end_pos=46363482;consensus_end_chr=chr22;consensus_mapping_end_pos2=46363482;consensus=CGCCTCTCCATCTGCTGGGGATGACAGGGAGCAGTGTGAGCCGTGAGGGCTTGGGCTCCCACTGCATGTGGGTCCTAGTTCTGGGGGCTCCGCACCCTGGCCCTGGGCCGATGGCCTAGACACCCACAACCGAGCCCTCTACCTCATCCAACACCGCTATGCCACACCCAGGGTCTGTTAGG
chr22	49077625	line2142	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=268;left_chr=chr22;left_pos=49077625;left_strand=+;left_softclipped_read_count=1;right_chr=chr22;right_pos=49077893;right_strand=+;right_softclipped_read_count=4;left_coverage=42;right_coverage=28;left_assembly_length=19;right_assembly_length=80;left_percent_identity=0.904819285174;left_percent_multimapping=0.275862068966;right_percent_identity=0.891089108911;right_percent_multimapping=0.232558139535;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=49077538;consensus_mapping_end_pos=49077961;consensus_end_chr=chr22;consensus_mapping_end_pos2=49077961;consensus=TCTCAGACAGAACACACGTGTAGTTATTTAGTTGAGTTAGAAGATGGGGTCTGTCCTTCTTGCACACACTCCGGATCCTGGGGTGTTGTTGACAAATCACAACTTCTGCACCCCTGTGGATGTGTTCAGAGGATCCAGAACTCTGTCC
chr22	49077626	line2143	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=267;left_chr=chr22;left_pos=49077626;left_strand=+;left_softclipped_read_count=7;right_chr=chr22;right_pos=49077893;right_strand=+;right_softclipped_read_count=4;left_coverage=42;right_coverage=28;left_assembly_length=75;right_assembly_length=80;left_percent_identity=0.904819285174;left_percent_multimapping=0.275862068966;right_percent_identity=0.893564356436;right_percent_multimapping=0.227272727273;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=49077532;consensus_mapping_end_pos=49077977;consensus_end_chr=chr22;consensus_mapping_end_pos2=49077977;consensus=CCTGATTCTCAGACAGAACACACGTGTAGTTATTTAGTTGAGTTAGAAGATGGGGTCTGTCCTTCTTGCACACACTCCGGATCCTGGGGTGTTGTTGACAAATCACAACTTCTGCACCCCTGTGGATGTGTTCAGAGGATCCAGAACTCTGTCCTCCTGCTCCAGGTTGT
chr22	49622516	line2144	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=1787;left_chr=chr22;left_pos=49622516;left_strand=+;left_softclipped_read_count=14;right_chr=chr22;right_pos=49624303;right_strand=+;right_softclipped_read_count=0;left_coverage=68;right_coverage=53;left_assembly_length=62;right_assembly_length=0;left_percent_identity=0.621357850071;left_percent_multimapping=0.914285714286;right_percent_identity=0.779386861214;right_percent_multimapping=0.465753424658;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=49622420;consensus_mapping_end_pos=49624364;consensus_end_chr=chr22;consensus_mapping_end_pos2=49624364;consensus=TAAGTTGTTACGACCTTGATTAGGTAGTCATTTCTGAGATGTGACACACCAAAATCATAAGCAATAACAAAAAAAGAGTAGATGAATTTGACATCTTTATTTATTTGCTATTTTTTGATGTACCAAAAGCTGTACATAATTAATGTACAGAACTCAATG
chr22	49863269	line2145	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=213;left_chr=chr22;left_pos=49863269;left_strand=+;left_softclipped_read_count=5;right_chr=chr22;right_pos=49863482;right_strand=+;right_softclipped_read_count=3;left_coverage=36;right_coverage=32;left_assembly_length=53;right_assembly_length=37;left_percent_identity=0.900690069007;left_percent_multimapping=0.242424242424;right_percent_identity=0.914278269932;right_percent_multimapping=0.263157894737;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=49863177;consensus_mapping_end_pos=49863570;consensus_end_chr=chr22;consensus_mapping_end_pos2=49863570;consensus=CAGGTTCCAATCCCAGAACTTCATCTGAAACATGCGACCAGGTGTCGCCAACCCCAGGCTTCTCTCCTAGATCTTCCAGAATAAGAGCGAAGATCTTACATGGCCCAGAAGCCTCCATGGTAAAGACCCTGGGGGAGGAGCTGGGGTGGAAAGGGCAATTATGGAGACCCTCGGGTGGTGGCG
chr22	49863269	line2146	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=216;left_chr=chr22;left_pos=49863269;left_strand=+;left_softclipped_read_count=5;right_chr=chr22;right_pos=49863485;right_strand=+;right_softclipped_read_count=1;left_coverage=36;right_coverage=33;left_assembly_length=53;right_assembly_length=39;left_percent_identity=0.914278269932;left_percent_multimapping=0.263157894737;right_percent_identity=0.900690069007;right_percent_multimapping=0.242424242424;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=49863177;consensus_mapping_end_pos=49863533;consensus_end_chr=chr22;consensus_mapping_end_pos2=49863533;consensus=CAGGTTCCAATCCCAGAACTTCATCTGAAACATGCGACCAGGTGTCGCCAACCCCAGGCTTCTCTCCTAGATCTTCCAGAATAAGAGCGAAGATCTTACATGGCCCAGAAGCCTCCATGGTAAAGACCCTGGGGGAGGAGCTGGGG
chr22	50301957	line2147	N	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=51;left_chr=chr22;left_pos=50301957;left_strand=+;left_softclipped_read_count=3;right_chr=chr22;right_pos=50302008;right_strand=+;right_softclipped_read_count=4;left_coverage=41;right_coverage=29;left_assembly_length=32;right_assembly_length=35;left_percent_identity=0.946359930111;left_percent_multimapping=0.3;right_percent_identity=0.935067925397;right_percent_multimapping=0.209302325581;consensus_start_pos=1;consensus_start_chr=chr22;consensus_mapping_start_pos=50301867;consensus_mapping_end_pos=50302105;consensus_end_chr=chr22;consensus_mapping_end_pos2=50302105;consensus=CTTTTCTTCACTGTTAAAAACAGATGGTCGGCCGGGCGCAGTGGCTCATGTCTGTAATCCCAGCACTTCGGGAGGCCAAGGTGGGTAGATCTACTACAAATACAAAATTAGCTGGGCATGGTGGCATGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCAGGGAG
