##fileformat=VCFv4.1
##cmdline=/home/cog/jvalleinclan/bin/NanoSV/bin/NanoSV -t 8 -c config_COLO829_NGMLR.ini -b /home/cog/jvalleinclan/bin/NanoSV/bin/human_hg19.bed -o COLO829T.nanosv.ngmlr.vcf /hpc/cog_bioinf/kloosterman/users/jvalleinclan/nanopore/colon/bams/colo829.tumor.ngmlr.sorted.merged.bam
##fileDate=20210708
##FILTER=<ID=PASS,Description="All filters passed">
##FILTER=<ID=SVcluster,Description="There are more than 2 SVs in a window of 1000 on both sides">
##FILTER=<ID=Gap,Description="The median gap size is larger than 100 for non insertions">
##FILTER=<ID=MapQual,Description="The median mapping quality is less than 30">
##FILTER=<ID=PID,Description="The median PID of one of the two sides is less than 0.8">
##FILTER=<ID=CIPOS,Description="The CIPOS is greater than 100">
##FILTER=<ID=CIEND,Description="The CIEND is greater than 100">
##FILTER=<ID=LowQual,Description="QUAL score is less than 20">
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variant">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=SVMETHOD,Number=1,Type=String,Description="Type of approach used to detect SV">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of structural variant">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Distance between the two genomic positions">
##INFO=<ID=RT,Number=3,Type=Integer,Description="Number of the different read types (2d, template, complement)">
##INFO=<ID=GAP,Number=1,Type=Integer,Description="Median number of bases between the two segments of the SV, in case of an insertion this is the size of the insertion">
##INFO=<ID=MAPQ,Number=2,Type=Integer,Description="Median mapping quality of the two segments of the structural variant">
##INFO=<ID=PID,Number=2,Type=Float,Description="Median percentage identity to the reference of the two segments of the structural variant">
##INFO=<ID=PLENGTH,Number=2,Type=Float,Description="Median segment length percentage of the two segments of the structural variant">
##INFO=<ID=RLENGTH,Number=1,Type=Integer,Description="Median length of the total reads">
##INFO=<ID=MATEID,Number=.,Type=String,Description="ID of mate breakend">
##INFO=<ID=PURITY_SCORE,Number=.,Type=Integer,Description="Purity of clusters after phasing">
##INFO=<ID=PHASING_SCORE,Number=.,Type=Integer,Description="Percentage of reads in two largest clusters after phasing">
##INFO=<ID=SNPS_USED,Number=.,Type=Integer,Description="SNPs used during phasing">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DR,Number=2,Type=Integer,Description="Number of reference reads">
##FORMAT=<ID=DV,Number=2,Type=Integer,Description="Number of variant reads">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality">
##FORMAT=<ID=HR,Number=2,Type=Integer,Description="Number of hanging variant reads">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##ALT=<ID=DEL,Description=Deletion>
##ALT=<ID=DUP,Description=Duplication>
##ALT=<ID=BND,Description=Breakend>
##ALT=<ID=INS,Description=Insertion>
##contig=<ID=1,length=249250621>
##contig=<ID=2,length=243199373>
##contig=<ID=3,length=198022430>
##contig=<ID=4,length=191154276>
##contig=<ID=5,length=180915260>
##contig=<ID=6,length=171115067>
##contig=<ID=7,length=159138663>
##contig=<ID=8,length=146364022>
##contig=<ID=9,length=141213431>
##contig=<ID=10,length=135534747>
##contig=<ID=11,length=135006516>
##contig=<ID=12,length=133851895>
##contig=<ID=13,length=115169878>
##contig=<ID=14,length=107349540>
##contig=<ID=15,length=102531392>
##contig=<ID=16,length=90354753>
##contig=<ID=17,length=81195210>
##contig=<ID=18,length=78077248>
##contig=<ID=19,length=59128983>
##contig=<ID=20,length=63025520>
##contig=<ID=21,length=48129895>
##contig=<ID=22,length=51304566>
##contig=<ID=X,length=155270560>
##contig=<ID=Y,length=59373566>
##contig=<ID=MT,length=16569>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	COLO829T_NanoSV
4	66211961	2749955	A	<INS>	485	PASS	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=66211962;CIPOS=-19,6;CIEND=-19,6;SVLEN=81;RT=0,13,0;GAP=81;MAPQ=54,54;PID=2.135,2.847;PLENGTH=0.996,0.96;RLENGTH=10841	GT:DR:DV:GQ:HR:PL	0/1:36,36:13,13:436:0,0:485,0,436
4	66212029	2749957	T	<INS>	1234	PASS	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=66212030;CIPOS=-34,12;CIEND=-34,12;SVLEN=78;RT=0,27,0;GAP=78;MAPQ=55,55;PID=2.121,2.154;PLENGTH=0.998,0.996;RLENGTH=7279	GT:DR:DV:GQ:HR:PL	0/1:37,37:27,27:379:0,0:1234,0,379
4	187996331	2762323	C	<INS>	227	PASS	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=187996332;CIPOS=-13,1;CIEND=-13,1;SVLEN=62;RT=0,9,0;GAP=62;MAPQ=53,53;PID=4.063,8.751;PLENGTH=0.925,0.887;RLENGTH=5813	GT:DR:DV:GQ:HR:PL	0/1:43,43:9,9:227:0,0:227,0,555
4	187996369	2762324	A	<INS>	820	PASS	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=187996370;CIPOS=-26,12;CIEND=-26,12;SVLEN=62;RT=0,20,0;GAP=62;MAPQ=52,52;PID=3.255,5.763;PLENGTH=0.987,0.994;RLENGTH=5634	GT:DR:DV:GQ:HR:PL	0/1:43,43:20,20:499:0,0:820,0,499
14	73014659	4788156	T	<INS>	1348	SVcluster	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=73014660;CIPOS=-13,22;CIEND=-13,22;SVLEN=94;RT=0,24,0;GAP=94;MAPQ=55,55;PID=1.78,3.42;PLENGTH=0.998,0.995;RLENGTH=12718	GT:DR:DV:GQ:HR:PL	1/1:2,2:23,23:92:0,1:1348,92,0
14	73014713	4788157	C	<INS>	1437	SVcluster	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=73014714;CIPOS=-17,6;CIEND=-17,6;SVLEN=93;RT=0,25,0;GAP=93;MAPQ=53,53;PID=3.191,1.92;PLENGTH=0.489,0.994;RLENGTH=8638	GT:DR:DV:GQ:HR:PL	1/1:2,2:25,25:99:0,0:1437,99,0
14	73014744	4788158	C	<INS>	1082	SVcluster	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=73014745;CIPOS=-14,3;CIEND=-14,3;SVLEN=88;RT=0,19,0;GAP=88;MAPQ=53,53;PID=1.726,2.428;PLENGTH=0.999,0.988;RLENGTH=7066	GT:DR:DV:GQ:HR:PL	1/1:2,2:19,19:69:0,0:1082,69,0
14	106333530	4791275	T	<INS>	128	SVcluster	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=106333531;CIPOS=-8,7;CIEND=-8,7;SVLEN=124;RT=0,6,0;GAP=124;MAPQ=44,44;PID=2.351,5.652;PLENGTH=0.98,0.932;RLENGTH=7155	GT:DR:DV:GQ:HR:PL	0/1:34,31:6,6:128:0,0:128,0,423
14	106333574	4791277	C	<INS>	59	SVcluster	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=106333575;CIPOS=-4,4;CIEND=-4,4;SVLEN=136;RT=0,4,0;GAP=136;MAPQ=52,52;PID=2.588,14.381;PLENGTH=0.997,0.184;RLENGTH=7400	GT:DR:DV:GQ:HR:PL	0/1:26,26:4,4:59:0,0:59,0,342
14	106333611	4791278	A	<INS>	689	SVcluster	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=106333612;CIPOS=-19,14;CIEND=-19,14;SVLEN=145;RT=0,15,0;GAP=145;MAPQ=45,45;PID=6.018,4.74;PLENGTH=0.966,1;RLENGTH=3982	GT:DR:DV:GQ:HR:PL	0/1:20,20:15,15:202:0,0:689,0,202
14	106333644	4791279	T	<INS>	613	SVcluster	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=106333645;CIPOS=-8,24;CIEND=-8,24;SVLEN=119;RT=0,14,0;GAP=119;MAPQ=48,47;PID=2.264,11.974;PLENGTH=1.302,0.42;RLENGTH=3532	GT:DR:DV:GQ:HR:PL	0/1:19,19:13,13:196:0,1:613,0,196
14	106333689	4791280	C	<INS>	182	SVcluster	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=106333690;CIPOS=-8,14;CIEND=-8,14;SVLEN=112;RT=0,6,0;GAP=112;MAPQ=47,47;PID=3.5,31.578;PLENGTH=0.996,0.359;RLENGTH=4718	GT:DR:DV:GQ:HR:PL	0/1:24,23:6,6:182:0,0:182,0,297
14	106333727	4791281	A	<INS>	341	SVcluster	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=106333728;CIPOS=-12,13;CIEND=-12,13;SVLEN=115;RT=0,9,0;GAP=115;MAPQ=51,51;PID=2.717,6.815;PLENGTH=1,0.3;RLENGTH=4078	GT:DR:DV:GQ:HR:PL	0/1:24,24:9,9:289:0,0:341,0,289
14	106333816	4791283	C	<INS>	467	SVcluster	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=106333817;CIPOS=-31,32;CIEND=-31,32;SVLEN=92;RT=0,13,0;GAP=92;MAPQ=53,53;PID=5.683,4.575;PLENGTH=0.545,0.263;RLENGTH=4571	GT:DR:DV:GQ:HR:PL	0/1:39,39:13,13:467:0,0:467,0,478
10	7635361	4792535	C	<INS>	398	PASS	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=7635362;CIPOS=-11,30;CIEND=-11,30;SVLEN=64;RT=0,11,0;GAP=64;MAPQ=51,51;PID=2.127,1.816;PLENGTH=0.993,0.51;RLENGTH=7579	GT:DR:DV:GQ:HR:PL	0/1:33,32:11,11:398:0,0:398,0,398
15	23707587	4943340	G	<INS>	9999	PASS	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=23707588;CIPOS=-15,43;CIEND=-15,43;SVLEN=401;RT=0,79,0;GAP=401;MAPQ=51,51;PID=3.161,2.951;PLENGTH=0.743,0.99;RLENGTH=4991	GT:DR:DV:GQ:HR:PL	1/1:28,28:79,79:12:0,0:9999,12,0
12	129771773	5003765	T	<INS>	1391	PASS	IMPRECISE;SVTYPE=INS;SVMETHOD=NanoSV_v1.2.0;END=129771774;CIPOS=-16,8;CIEND=-16,8;SVLEN=251;RT=0,27,0;GAP=251;MAPQ=53,54;PID=1.756,2.315;PLENGTH=0.998,0.996;RLENGTH=9233	GT:DR:DV:GQ:HR:PL	0/1:11,11:27,27:16:0,0:1391,0,16
5	28787992	31693	A	A[5:28963094[	914	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-3,9;CIEND=-4,13;SVLEN=175102;RT=0,19,0;GAP=0;MAPQ=56,54;PID=0.946,0.941;PLENGTH=0.394,0.507;RLENGTH=20633	GT:DR:DV:GQ:HR:PL	0/1:21,16:19,19:161:0,0:914,0,161
5	178973289	185598	T	T[5:178973323[	1553	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-10,3;CIEND=-12,2;SVLEN=34;RT=0,29,0;GAP=0;MAPQ=50,50;PID=2.034,2.048;PLENGTH=1.329,0.999;RLENGTH=5859	GT:DR:DV:GQ:HR:PL	1/1:8,8:29,29:36:0,0:1553,36,0
12	92161147	341348	A	A[12:92161183[	700	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-6,2;CIEND=-5,1;SVLEN=36;RT=0,18,0;GAP=0;MAPQ=55,55;PID=2.582,2.671;PLENGTH=0.996,1;RLENGTH=4039	GT:DR:DV:GQ:HR:PL	0/1:45,45:18,18:537:0,0:700,0,537
18	66379461	681968	A	A[18:66382827[	140	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-9,0;CIEND=-10,0;SVLEN=3366;RT=0,8,0;GAP=0;MAPQ=55,55;PID=1.804,2.354;PLENGTH=1.002,0.998;RLENGTH=9842	GT:DR:DV:GQ:HR:PL	0/1:51,46:8,8:140:0,0:140,0,637
11	80785599	825366	A	A[11:81093783[	629	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-2,12;CIEND=-3,13;SVLEN=308184;RT=0,15,0;GAP=0;MAPQ=55,55;PID=0.943,0.939;PLENGTH=0.617,0.473;RLENGTH=11237	GT:DR:DV:GQ:HR:PL	0/1:25,35:15,15:342:0,0:629,0,342
3	26663922	1199669	G	G]3:26664499]	9999	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-20,15;CIEND=-26,9;SVLEN=577;RT=0,78,0;GAP=0;MAPQ=56,56;PID=0.938,0.932;PLENGTH=0.594,0.341;RLENGTH=16228	GT:DR:DV:GQ:HR:PL	0/1:168,77:78,78:1314:0,0:9999,0,1314
1	118516186	1514515	T	T[1:118516223[	941	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-8,0;CIEND=-10,1;SVLEN=37;RT=0,20,0;GAP=0;MAPQ=55,55;PID=2.177,3.605;PLENGTH=0.993,0.993;RLENGTH=9548	GT:DR:DV:GQ:HR:PL	0/1:23,23:20,20:219:0,0:941,0,219
1	207981231	1645807	A	A[1:208014820[	131	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-3,5;CIEND=-4,2;SVLEN=33589;RT=0,9,0;GAP=0;MAPQ=56,55;PID=0.921,0.928;PLENGTH=0.596,0.39;RLENGTH=12004	GT:DR:DV:GQ:HR:PL	0/1:52,66:9,9:131:0,0:131,0,778
1	224782795	1680160	C	C[1:224786017[	1453	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-26,14;CIEND=-27,19;SVLEN=3222;RT=0,35,0;GAP=0;MAPQ=54,54;PID=1.39,1.266;PLENGTH=0.766,0.901;RLENGTH=13285	GT:DR:DV:GQ:HR:PL	0/1:72,73:35,35:834:0,0:1453,0,834
8	131274638	1953420	C	C[8:131274679[	299	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-4,0;CIEND=-10,12;SVLEN=41;RT=0,11,0;GAP=0;MAPQ=54,54;PID=2.491,2.453;PLENGTH=0.997,0.588;RLENGTH=8524	GT:DR:DV:GQ:HR:PL	0/1:48,50:11,11:299:0,0:299,0,628
16	58624507	2050885	A	A[16:58663301[	413	SVcluster	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-4,5;CIEND=-9,0;SVLEN=38794;RT=0,7,0;GAP=2;MAPQ=53,51;PID=0.931,0.943;PLENGTH=0.154,0.463;RLENGTH=14531	GT:DR:DV:GQ:HR:PL	1/1:0,0:7,7:35:0,0:413,35,0
16	58624515	2050886	G	G[16:58663314[	118	SVcluster	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=0,0;CIEND=-1,1;SVLEN=38799;RT=0,2,0;GAP=4;MAPQ=51,46;PID=0.942,0.93;PLENGTH=0.131,0.666;RLENGTH=35455	GT:DR:DV:GQ:HR:PL	1/1:0,0:2,2:10:0,0:118,10,0
16	58624541	2050888	C	C[16:58663324[	1477	SVcluster	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-13,4;CIEND=-15,13;SVLEN=38783;RT=0,25,0;GAP=0;MAPQ=52,51;PID=1.337,0.929;PLENGTH=0.502,0.496;RLENGTH=6098	GT:DR:DV:GQ:HR:PL	1/1:0,0:25,25:127:0,0:1477,127,0
16	78928602	2072375	T	T[16:79094965[	113	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-1,4;CIEND=0,6;SVLEN=166363;RT=0,4,0;GAP=0;MAPQ=51,55;PID=0.937,0.94;PLENGTH=0.273,0.763;RLENGTH=24396	GT:DR:DV:GQ:HR:PL	0/1:15,19:4,4:113:0,0:113,0,217
16	78928639	2072377	G	G[16:79095009[	599	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-7,12;CIEND=-10,14;SVLEN=166370;RT=0,13,0;GAP=0;MAPQ=56,56;PID=0.936,0.938;PLENGTH=0.603,0.396;RLENGTH=23716	GT:DR:DV:GQ:HR:PL	0/1:15,19:13,13:171:0,0:599,0,171
15	23712639	2194152	T	T[15:23717163[	106	GAP	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-4,18;CIEND=0,12;SVLEN=4524;RT=0,13,0;GAP=103;MAPQ=55,56;PID=0.978,0.931;PLENGTH=0.295,0.659;RLENGTH=7651	GT:DR:DV:GQ:HR:PL	0/1:91,89:11,11:106:2,0:106,0,1196
15	23685608	2294973	T	[15:23706879[T	122	GAP	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-1,2;CIEND=-11,0;SVLEN=21271;RT=0,10,0;GAP=187;MAPQ=50,53;PID=0.921,7.428;PLENGTH=0.335,0.068;RLENGTH=11893	GT:DR:DV:GQ:HR:PL	0/1:44,95:10,10:122:0,0:122,0,920
7	52440354	2413253	G	G[7:52440388[	1111	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-9,0;CIEND=-11,2;SVLEN=34;RT=0,27,0;GAP=0;MAPQ=55,55;PID=3.021,4.317;PLENGTH=0.995,0.997;RLENGTH=5766	GT:DR:DV:GQ:HR:PL	0/1:57,58:27,27:665:0,0:1111,0,665
7	57471577	2423055	G	G[7:57496111[	1147	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-7,5;CIEND=-2,15;SVLEN=24534;RT=0,26,0;GAP=0;MAPQ=50,51;PID=0.925,0.942;PLENGTH=0.575,0.394;RLENGTH=16517	GT:DR:DV:GQ:HR:PL	0/1:45,40:26,26:461:0,0:1147,0,461
7	77981882	2454732	A	A[7:78082289[	25	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-8,0;CIEND=-3,5;SVLEN=100407;RT=0,9,0;GAP=0;MAPQ=56,56;PID=0.939,0.943;PLENGTH=0.649,0.201;RLENGTH=21464	GT:DR:DV:GQ:HR:PL	0/1:69,84:9,9:25:0,0:25,0,1023
7	110393332	2522787	T	T[7:110394461[	532	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-12,0;CIEND=-17,1;SVLEN=1129;RT=0,18,0;GAP=0;MAPQ=54,54;PID=3.822,3.832;PLENGTH=0.731,0.999;RLENGTH=15390	GT:DR:DV:GQ:HR:PL	0/1:68,69:17,17:532:0,1:532,0,868
7	125746123	2555662	A	A[7:126166901[	442	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-2,3;CIEND=-2,3;SVLEN=420778;RT=0,15,0;GAP=0;MAPQ=56,44;PID=0.999,0.889;PLENGTH=0.761,0.092;RLENGTH=7678	GT:DR:DV:GQ:HR:PL	0/1:40,73:14,14:442:1,0:442,0,715
10	36118315	2813074	C	C[10:36118375[	11	LowQual	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=0,0;CIEND=-10,7;SVLEN=60;RT=0,4,0;GAP=0;MAPQ=52,52;PID=10.768,1.555;PLENGTH=0.996,8.074;RLENGTH=2631	GT:DR:DV:GQ:HR:PL	0/1:34,34:4,4:11:0,0:11,0,455
10	55476345	2827951	T	T[10:55476896[	125	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-3,3;CIEND=-7,4;SVLEN=551;RT=0,6,0;GAP=0;MAPQ=57,57;PID=2.208,3.419;PLENGTH=0.999,1.212;RLENGTH=5915	GT:DR:DV:GQ:HR:PL	0/1:34,32:6,6:125:0,0:125,0,430
10	89700303	2863443	T	T[10:89712341[	2441	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-10,6;CIEND=-12,14;SVLEN=12038;RT=0,42,0;GAP=13;MAPQ=54,54;PID=0.944,0.936;PLENGTH=0.393,0.494;RLENGTH=12512	GT:DR:DV:GQ:HR:PL	1/1:1,0:41,41:204:1,0:2441,204,0
3	60132754	3041836	T	T[3:60204543[	95	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=0,3;CIEND=0,0;SVLEN=71789;RT=0,8,0;GAP=0;MAPQ=54,56;PID=0.923,167.411;PLENGTH=0.393,0.003;RLENGTH=26983	GT:DR:DV:GQ:HR:PL	0/1:68,44:8,8:95:0,0:95,0,741
9	28034297	3775797	A	A[9:28157690[	875	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-27,5;CIEND=-6,9;SVLEN=123393;RT=0,18,0;GAP=0;MAPQ=54,55;PID=0.914,0.937;PLENGTH=0.081,0.48;RLENGTH=22115	GT:DR:DV:GQ:HR:PL	0/1:19,13:18,18:131:0,0:875,0,131
9	114293050	3880848	T	T[9:114293097[	1156	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-32,4;CIEND=-35,2;SVLEN=47;RT=0,26,0;GAP=0;MAPQ=53,53;PID=2.827,1.664;PLENGTH=0.984,0.998;RLENGTH=11383	GT:DR:DV:GQ:HR:PL	0/1:41,41:26,26:440:0,0:1156,0,440
X	31196912	3967096	C	C[X:31216169[	134	SVcluster	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-3,0;CIEND=0,1;SVLEN=19257;RT=0,5,0;GAP=0;MAPQ=52,55;PID=0.952,0.952;PLENGTH=0.359,0.641;RLENGTH=27167	GT:DR:DV:GQ:HR:PL	0/1:22,23:5,5:134:0,0:134,0,289
X	31196939	3967097	G	G[X:31216200[	140	SVcluster	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-7,3;CIEND=0,1;SVLEN=19261;RT=0,5,0;GAP=-1;MAPQ=55,52;PID=0.92,0.909;PLENGTH=0.229,0.766;RLENGTH=14839	GT:DR:DV:GQ:HR:PL	0/1:22,21:5,5:140:0,0:140,0,275
X	31196965	3967099	A	A[X:31216231[	194	SVcluster	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-2,7;CIEND=-10,6;SVLEN=19266;RT=0,6,0;GAP=0;MAPQ=56,56;PID=0.921,0.914;PLENGTH=0.8,0.307;RLENGTH=19921	GT:DR:DV:GQ:HR:PL	0/1:22,21:6,6:194:0,0:194,0,269
X	31301206	3967190	T	T[X:32038750[	671	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=0,10;CIEND=-1,8;SVLEN=737544;RT=0,14,0;GAP=11;MAPQ=56,55;PID=0.942,0.935;PLENGTH=0.239,0.508;RLENGTH=19742	GT:DR:DV:GQ:HR:PL	0/1:8,20:14,14:124:0,0:671,0,124
X	31301232	3967191	T	T[X:32038761[	131	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-2,6;CIEND=-1,6;SVLEN=737529;RT=0,4,0;GAP=0;MAPQ=53,55;PID=0.954,0.882;PLENGTH=0.641,0.251;RLENGTH=10311	GT:DR:DV:GQ:HR:PL	0/1:8,20:4,4:131:0,0:131,0,175
X	32077855	3967638	G	G[X:32293097[	299	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-1,2;CIEND=-3,1;SVLEN=215242;RT=0,8,0;GAP=2;MAPQ=52,53;PID=0.976,0.939;PLENGTH=0.625,0.68;RLENGTH=11041	GT:DR:DV:GQ:HR:PL	0/1:25,19:8,8:266:0,0:299,0,266
X	32098531	3967659	A	A[X:32201251[	807	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-1,2;CIEND=-1,1;SVLEN=102720;RT=0,14,0;GAP=0;MAPQ=55,57;PID=0.935,0.938;PLENGTH=0.379,0.617;RLENGTH=17362	GT:DR:DV:GQ:HR:PL	1/1:1,1:14,14:57:0,0:807,57,0
X	32098559	3967660	A	A[X:32201282[	159	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-9,0;CIEND=-3,1;SVLEN=102723;RT=0,3,0;GAP=0;MAPQ=50,51;PID=1.77,0.938;PLENGTH=0.807,0.491;RLENGTH=13517	GT:DR:DV:GQ:HR:PL	1/1:1,1:3,3:3:0,0:159,3,0
X	34059727	3969666	C	C[X:34062653[	639	SVcluster	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-15,14;CIEND=-11,12;SVLEN=2926;RT=0,11,0;GAP=0;MAPQ=55,55;PID=1.311,2.046;PLENGTH=0.995,0.824;RLENGTH=8366	GT:DR:DV:GQ:HR:PL	1/1:1,0:11,11:49:0,0:639,49,0
X	34059741	3969667	A	A[X:34062677[	109	SVcluster	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=0,0;CIEND=-1,1;SVLEN=2936;RT=0,2,0;GAP=3;MAPQ=60,60;PID=0.952,0.949;PLENGTH=0.204,0.785;RLENGTH=11494	GT:DR:DV:GQ:HR:PL	1/1:1,0:2,2:4:0,0:109,4,0
X	34059777	3969669	G	G[X:34062691[	1240	SVcluster	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-1,1;CIEND=-1,15;SVLEN=2914;RT=0,21,0;GAP=0;MAPQ=56,56;PID=1.537,1.253;PLENGTH=0.793,0.997;RLENGTH=10185	GT:DR:DV:GQ:HR:PL	1/1:0,0:21,21:107:0,0:1240,107,0
20	13160726	4121033	G	G[20:13164100[	1130	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-17,12;CIEND=-23,12;SVLEN=3374;RT=0,25,0;GAP=0;MAPQ=55,53;PID=0.948,0.945;PLENGTH=0.47,0.795;RLENGTH=12536	GT:DR:DV:GQ:HR:PL	0/1:38,35:25,25:382:0,0:1130,0,382
20	14962958	4124669	C	C[20:15013952[	122	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-4,16;CIEND=-3,14;SVLEN=50994;RT=0,8,0;GAP=3;MAPQ=53,53;PID=0.934,0.919;PLENGTH=0.709,0.351;RLENGTH=8111	GT:DR:DV:GQ:HR:PL	0/1:65,38:8,8:122:0,0:122,0,678
20	14962983	4124670	T	T[20:15013981[	17	LowQual	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-33,3;CIEND=-3,1;SVLEN=50998;RT=0,6,0;GAP=1;MAPQ=55,54;PID=0.929,0.937;PLENGTH=0.67,0.382;RLENGTH=9310	GT:DR:DV:GQ:HR:PL	0/1:64,38:6,6:17:0,0:17,0,682
20	15000616	4124740	G	G[20:15013835[	155	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-2,8;CIEND=0,8;SVLEN=13219;RT=0,6,0;GAP=-1;MAPQ=53,56;PID=0.948,0.952;PLENGTH=0.368,0.562;RLENGTH=29599	GT:DR:DV:GQ:HR:PL	0/1:28,28:6,6:155:0,0:155,0,360
20	33219526	4156901	C	C[20:33219569[	296	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-8,4;CIEND=-9,13;SVLEN=43;RT=0,10,0;GAP=0;MAPQ=53,53;PID=2.744,3.338;PLENGTH=0.938,0.999;RLENGTH=7816	GT:DR:DV:GQ:HR:PL	0/1:40,41:10,10:296:0,0:296,0,514
20	33219566	4156902	T	T[20:33219615[	1537	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-26,23;CIEND=-21,17;SVLEN=49;RT=0,33,0;GAP=0;MAPQ=54,54;PID=1.649,3.351;PLENGTH=0.997,0.765;RLENGTH=9036	GT:DR:DV:GQ:HR:PL	0/1:40,41:33,33:397:0,0:1537,0,397
14	104560090	4388169	G	G[14:104560146[	2519	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-24,7;CIEND=-26,8;SVLEN=56;RT=0,44,0;GAP=0;MAPQ=54,54;PID=3.896,1.71;PLENGTH=0.814,0.998;RLENGTH=7036	GT:DR:DV:GQ:HR:PL	1/1:4,4:44,44:168:0,0:2519,168,0
10	7132891	4829154	T	T[19:17397660[	224	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-9,0;CIEND=-10,1;RT=0,8,0;GAP=0;MAPQ=55,50;PID=0.925,0.922;PLENGTH=0.545,0.24;RLENGTH=14851	GT:DR:DV:GQ:HR:PL	0/1:41,28:8,8:224:0,0:224,0,441
1	224646570	4834831	A	]1:224800120]A	427	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-5,7;CIEND=-9,2;SVLEN=153550;RT=0,17,0;GAP=4;MAPQ=55,56;PID=0.933,0.939;PLENGTH=0.382,0.604;RLENGTH=15810	GT:DR:DV:GQ:HR:PL	0/1:84,79:17,17:427:0,0:427,0,1052
1	224646605	4834832	C	]1:224800120]C	265	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-14,9;CIEND=0,1;SVLEN=153515;RT=0,14,0;GAP=36;MAPQ=50,54;PID=0.94,0.921;PLENGTH=0.491,0.395;RLENGTH=16623	GT:DR:DV:GQ:HR:PL	0/1:84,79:14,14:265:0,0:265,0,1067
22	33759239	4893515	C	C[22:33838380[	760	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-25,14;CIEND=-25,19;SVLEN=79141;RT=0,21,0;GAP=0;MAPQ=53,53;PID=0.934,0.928;PLENGTH=0.342,0.608;RLENGTH=13560	GT:DR:DV:GQ:HR:PL	0/1:52,72:21,21:759:0,0:760,0,759
15	23831654	4986369	C	C]15:23992706]	1132	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-16,7;CIEND=-12,7;SVLEN=161052;RT=0,29,0;GAP=1;MAPQ=54,53;PID=0.939,0.934;PLENGTH=0.423,0.446;RLENGTH=14791	GT:DR:DV:GQ:HR:PL	0/1:94,32:27,27:737:1,1:1132,0,737
7	85844668	5171420	A	]7:85853702]A	181	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=0,6;CIEND=-11,0;SVLEN=9034;RT=0,12,0;GAP=0;MAPQ=52,52;PID=0.937,0.919;PLENGTH=0.747,0.376;RLENGTH=10897	GT:DR:DV:GQ:HR:PL	0/1:65,90:12,12:181:0,0:181,0,1021
7	104485068	5171904	G	]7:104612301]G	1393	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-4,17;CIEND=-2,2;SVLEN=127233;RT=0,35,0;GAP=0;MAPQ=55,51;PID=0.923,0.933;PLENGTH=0.471,0.447;RLENGTH=20099	GT:DR:DV:GQ:HR:PL	0/1:79,77:34,34:914:1,0:1393,0,914
9	28031802	5218067	A	A]9:28059175]	467	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-6,4;CIEND=-7,6;SVLEN=27373;RT=0,11,0;GAP=0;MAPQ=56,54;PID=0.933,6.857;PLENGTH=0.166,0.08;RLENGTH=26345	GT:DR:DV:GQ:HR:PL	0/1:23,19:11,11:237:0,0:467,0,237
9	28031833	5218069	T	T]9:28059143]	38	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-6,2;CIEND=-3,0;SVLEN=27310;RT=0,3,0;GAP=5;MAPQ=55,56;PID=0.903,0.901;PLENGTH=0.563,0.371;RLENGTH=12945	GT:DR:DV:GQ:HR:PL	0/1:22,19:3,3:38:0,0:38,0,271
3	26431912	5306260	A	[6:26194044[A	379	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-19,8;CIEND=-14,14;RT=0,22,0;GAP=-1;MAPQ=42,60;PID=1.086,0.91;PLENGTH=0.524,0.023;RLENGTH=14832	GT:DR:DV:GQ:HR:PL	0/1:144,71:16,16:379:3,3:379,0,1405
3	24565108	5407734	A	[3:24566181[A	2268	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-11,20;CIEND=-6,15;SVLEN=1073;RT=0,52,0;GAP=0;MAPQ=53,53;PID=0.937,0.931;PLENGTH=0.489,0.361;RLENGTH=19804	GT:DR:DV:GQ:HR:PL	0/1:45,134:52,52:985:0,0:2268,0,985
3	24565151	5407735	G	[3:24566134[G	271	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-8,21;CIEND=-13,9;SVLEN=983;RT=0,15,0;GAP=0;MAPQ=53,56;PID=0.937,0.936;PLENGTH=0.184,0.635;RLENGTH=17407	GT:DR:DV:GQ:HR:PL	0/1:45,134:15,15:271:0,0:271,0,1174
7	126098490	5471587	T	[7:126167442[T	1654	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-19,13;CIEND=-8,23;SVLEN=68952;RT=0,37,0;GAP=0;MAPQ=55,55;PID=0.943,0.942;PLENGTH=0.303,0.441;RLENGTH=21146	GT:DR:DV:GQ:HR:PL	0/1:43,71:37,37:607:0,0:1654,0,607
9	28031861	5492703	A	[9:28034465[A	686	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-11,9;CIEND=-9,4;SVLEN=2604;RT=0,16,0;GAP=3;MAPQ=54,56;PID=0.915,0.921;PLENGTH=0.135,0.413;RLENGTH=15571	GT:DR:DV:GQ:HR:PL	0/1:22,19:14,14:209:1,1:686,0,209
10	60477246	5587378	T	]3:25401079]T	127	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=0,2;CIEND=-1,7;RT=0,14,0;GAP=-1;MAPQ=60,54;PID=0.93,0.935;PLENGTH=0.009,0.416;RLENGTH=18873	GT:DR:DV:GQ:HR:PL	0/1:44,165:14,14:127:0,0:127,0,1389
15	41621297	5607026	A	]15:41628510]A	299	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-7,23;CIEND=-13,14;SVLEN=7213;RT=0,10,0;GAP=0;MAPQ=50,50;PID=0.929,0.974;PLENGTH=0.292,0.763;RLENGTH=19395	GT:DR:DV:GQ:HR:PL	0/1:50,30:10,10:299:0,0:299,0,508
15	84810725	5607874	G	]7:150746657]G	1390	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-4,10;CIEND=-14,1;RT=0,30,0;GAP=1;MAPQ=48,50;PID=0.925,0.903;PLENGTH=0.349,0.604;RLENGTH=11864	GT:DR:DV:GQ:HR:PL	0/1:37,39:30,30:377:0,0:1390,0,377
10	60477424	5621450	C	C]3:25400602]	85	GAP	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-8,17;CIEND=-3,1;RT=0,15,0;GAP=192;MAPQ=60,54;PID=0.917,0.951;PLENGTH=0.01,0.393;RLENGTH=17843	GT:DR:DV:GQ:HR:PL	0/1:45,196:15,15:85:0,0:85,0,1607
1	87337014	5623513	G	G]10:33386473]	551	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-5,29;CIEND=-4,19;RT=0,15,0;GAP=32;MAPQ=52,53;PID=0.93,5.24;PLENGTH=0.869,0.187;RLENGTH=9566	GT:DR:DV:GQ:HR:PL	0/1:45,41:15,15:524:0,0:551,0,524
10	7634373	5715461	A	[18:9868617[A	562	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-1,10;CIEND=0,18;RT=0,15,0;GAP=0;MAPQ=51,52;PID=5.379,0.932;PLENGTH=0.161,0.648;RLENGTH=9823	GT:DR:DV:GQ:HR:PL	0/1:39,43:15,15:496:0,0:562,0,496
10	7059512	5755543	C	]19:17396809]C	89	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-1,2;CIEND=-2,1;RT=0,6,0;GAP=1;MAPQ=51,48;PID=0.925,0.899;PLENGTH=0.305,0.66;RLENGTH=16768	GT:DR:DV:GQ:HR:PL	0/1:44,34:6,6:89:0,0:89,0,514
3	186581026	3301886	G	G[3:186585300[	9999	PASS	IMPRECISE;SVTYPE=BND;SVMETHOD=NanoSV_v1.2.0;CIPOS=-21,10;CIEND=-20,18;SVLEN=4274;RT=0,77,0;GAP=0;MAPQ=52,49;PID=0.94,0.938;PLENGTH=0.399,0.419;RLENGTH=15602	GT:DR:DV:GQ:HR:PL	1/1:0,0:77,77:393:0,0:9999,393,0
