^renv$
^renv\.lock$
^codecov\.yml$
^_pkgdown\.yml$
^LICENSE\.md$
^data-raw$
^appveyor\.yml$
^\.travis\.yml$
^README\.Rmd$
^.*\.Rproj$
^\.Rproj\.user$
^CRAN-RELEASE$
^\.github$
^UCSCXenaShiny\.Rcheck$
^UCSCXenaShiny.*\.tar\.gz$
^UCSCXenaShiny.*\.tgz$
^modules_apps$
^docs$
^paper$
^data-remote$
^\.idea$

data/pancan_MSI.rda
data/tcga_pan_immune_signature.rda
data/tcga_MSI.rda
data/tcga_stemness.rda
data/tcga_TIL.rda
data/tcga_tmb.rda
data/tcga_chr_alteration.rda

inst/extdata/pancan_MSI.rda
inst/extdata/tcga_pan_immune_signature.rda
inst/extdata/tcga_MSI.rda
inst/extdata/tcga_stemness.rda
inst/extdata/tcga_TIL.rda
inst/extdata/tcga_tmb.rda
inst/extdata/tcga_chr_alteration.rda
inst/extdata/pancancer_conserved_immune_subtype.rda
inst/extdata/toil_sig_score.rda

inst/extdata/ccle_expr_and_drug_response.rda
inst/extdata/transcript_identifier.rda

inst/extdata/toil_sig_score.rda
inst/extdata/tcga_PW.rda
inst/extdata/tcga_PW_meta.rda
inst/extdata/pancan_identifier_help
inst/extdata/tcga_PW_cross_raw.rda
inst/extdata/tcga_PW_cross.rda
inst/extdata/gtex_PW.rda

inst/extdata/v2.*rda
inst/extdata/OP*

inst/extdata/pcawg_PW.rda
inst/extdata/pcawg_TIL.rda
inst/extdata/pcawg_identifier.rda
inst/extdata/ccle_identifier.rda

.Script.r

^doc$
^Meta$

Dockerfile
deploy.*
.dockerignore
^CRAN-SUBMISSION$
^pkgdown$
