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<title>Graphical diagnostics for class 'sensiIntra_Influ' — sensi_plot.sensiIntra_Influ • sensiPhy</title>


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intra_influ_phyglm" />
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    <div class="page-header">
    <h1>Graphical diagnostics for class 'sensiIntra_Influ'</h1>
    <small class="dont-index">Source: <a href='https://github.com/paternogbc/sensiPhy/blob/master/R/sensi_plot.sensiINTER_Influ.R'><code>R/sensi_plot.sensiINTER_Influ.R</code></a></small>
    <div class="hidden name"><code>sensi_plot.sensiIntra_Influ.Rd</code></div>
    </div>

    <div class="ref-description">
    <p><code>sensi_plot.intra_influ</code> Plot results from <code>intra_influ_phylm</code> and 
<code>intra_influ_phyglm</code></p>
    </div>

    <pre class="usage"><span class='co'># S3 method for sensiIntra_Influ</span>
<span class='fu'><a href='sensi_plot.html'>sensi_plot</a></span>(<span class='no'>x</span>, <span class='kw'>graphs</span> <span class='kw'>=</span> <span class='st'>"all"</span>, <span class='no'>...</span>)</pre>

    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <table class="ref-arguments">
    <colgroup><col class="name" /><col class="desc" /></colgroup>
    <tr>
      <th>x</th>
      <td><p>output from <code>influ_phylm</code> or <code>intra_influ_phyglm</code></p></td>
    </tr>
    <tr>
      <th>graphs</th>
      <td><p>choose which graph should be printed on the output ("all", 1,2,3 or 4)</p></td>
    </tr>
    <tr>
      <th>...</th>
      <td><p>further arguments to methods</p></td>
    </tr>
    </table>

    <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>

    <p>For 'x' from intra_influ_phylm or intra_influ_phyglm:</p>
<p><strong>Graph 1:</strong> Most common influential species on model estimates.
 Percentage of iterations (n.tree or n.intra) where the removal of individual
  species caused significant change in model estimate (sDIFestimate &gt; cutoff).</p>
<p><strong>Graph 2:</strong> Shift on model estimate after species removal for most influential
 species. Small red dots represent individual reruns between different trees or 
 simulations while large red dots represent the average DIFestimate among all 
 iterations.</p>
    <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>

    <div class='dont-index'><p><code><a href='intra_influ_phylm.html'>intra_influ_phylm</a></code>; 
<code><a href='intra_influ_phyglm.html'>intra_influ_phyglm</a></code></p></div>

  </div>
  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
    <h2>Contents</h2>
    <ul class="nav nav-pills nav-stacked">
      <li><a href="#arguments">Arguments</a></li>
      <li><a href="#details">Details</a></li>
      <li><a href="#see-also">See also</a></li>
    </ul>

    <h2>Author</h2>
    <p>Gustavo Paterno, Caterina Penone</p>
  </div>
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