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<title>Graphical diagnostics for class 'sensiClade.TraitEvol' — sensi_plot.sensiClade.TraitEvol • sensiPhy</title>


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<meta property="og:title" content="Graphical diagnostics for class 'sensiClade.TraitEvol' — sensi_plot.sensiClade.TraitEvol" />
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    <h1>Graphical diagnostics for class 'sensiClade.TraitEvol'</h1>
    <small class="dont-index">Source: <a href='https://github.com/paternogbc/sensiPhy/blob/master/R/sensi_plot.sensiClade.R'><code>R/sensi_plot.sensiClade.R</code></a></small>
    <div class="hidden name"><code>sensi_plot.sensiClade.TraitEvol.Rd</code></div>
    </div>

    <div class="ref-description">
    <p>Plot results from <code>clade_discrete</code> and <code>clade_continuous</code></p>
    </div>

    <pre class="usage"><span class='co'># S3 method for sensiClade.TraitEvol</span>
<span class='fu'><a href='sensi_plot.html'>sensi_plot</a></span>(<span class='no'>x</span>, <span class='kw'>clade</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>graph</span> <span class='kw'>=</span> <span class='st'>"all"</span>, <span class='no'>...</span>)</pre>

    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <table class="ref-arguments">
    <colgroup><col class="name" /><col class="desc" /></colgroup>
    <tr>
      <th>x</th>
      <td><p>output from <code>clade_discrete</code> or <code>clade_continuous</code></p></td>
    </tr>
    <tr>
      <th>clade</th>
      <td><p>The name of the clade to be evaluated (see details)</p></td>
    </tr>
    <tr>
      <th>graph</th>
      <td><p>The graph to be printed. Default <code>all</code>, or 
for <code>clade_continuous</code> set <code>sigsq</code> or <code>optpar</code> 
and for <code>clade_discrete</code> set<code>q12</code> or <code>q21</code>.</p></td>
    </tr>
    <tr>
      <th>...</th>
      <td><p>further arguments to methods.</p></td>
    </tr>
    </table>

    <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>

    <p>For 'x' from clade_discrete or clade_continuous:</p>
<p><strong>Graph 1:</strong> Distribution of the simulated parameter estimates (Null distribution
for a given clade sample size).
The red dashed line represents the estimated signal for the reduced data 
(without the focal clade) and the black line represents the signal estimate
 for the full data.</p>
    <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>

    <div class='dont-index'><p><code><a href='clade_continuous.html'>clade_continuous</a></code> or <code><a href='clade_discrete.html'>clade_discrete</a></code></p></div>

  </div>
  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
    <h2>Contents</h2>
    <ul class="nav nav-pills nav-stacked">
      <li><a href="#arguments">Arguments</a></li>
      <li><a href="#details">Details</a></li>
      <li><a href="#see-also">See also</a></li>
    </ul>

    <h2>Author</h2>
    <p>Gustavo Paterno &amp; Gijsbert Werner</p>
  </div>
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